Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00024615m |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 52509.7 Isoelectric Point: 6.3466 |
Chromosome | Chromosome/Scaffold: 002348 Start: 8070 End: 11005 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 367 | 446 | 3.1e-27 |
WCVANPARNLDSISDHMKLACSMADCTTLYYGGSCYGIGQKGNVSYAFNSYYQQQKQDPKSCDFGGLGMITYLDPSMGEC | |||
GH17 | 27 | 346 | 0 |
IGVNWGTVSSHRAPPGVVVDLMHANRISKVKLFDTDPGVLRALAGSGIQVMVGLTNGELASVAGSQAAADAWVAQNVSRYVGRGGVDIRYIAVGNEPFLT SYQGQFESYIIPAMTNIQQSLVKANLASYVKLVVPCNADAYESASVPSQGVFRTELTQIMTQLAAFLSSSGAPFVVNIYPFLSLYQNSDFPQDYAFFEGS THPLVDGPNVYYNAFDGNFDTLVSALGKIGYGNLPIAIGEIGWPTEGAPSANLTAARAFNQGLINRITSNKGTPLRPGVPPADVYLFSLLDEEQKSILPG NFERHWGIFSFDGQAKYPLN |
Full Sequence |
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Protein Sequence Length: 492 Download |
MAARAAALLA AIFLGALGTA RRADAAIGVN WGTVSSHRAP PGVVVDLMHA NRISKVKLFD 60 TDPGVLRALA GSGIQVMVGL TNGELASVAG SQAAADAWVA QNVSRYVGRG GVDIRYIAVG 120 NEPFLTSYQG QFESYIIPAM TNIQQSLVKA NLASYVKLVV PCNADAYESA SVPSQGVFRT 180 ELTQIMTQLA AFLSSSGAPF VVNIYPFLSL YQNSDFPQDY AFFEGSTHPL VDGPNVYYNA 240 FDGNFDTLVS ALGKIGYGNL PIAIGEIGWP TEGAPSANLT AARAFNQGLI NRITSNKGTP 300 LRPGVPPADV YLFSLLDEEQ KSILPGNFER HWGIFSFDGQ AKYPLNLGLG NSVLKNAKEV 360 PYLPSRWCVA NPARNLDSIS DHMKLACSMA DCTTLYYGGS CYGIGQKGNV SYAFNSYYQQ 420 QKQDPKSCDF GGLGMITYLD PSMGECRFLV GVDDSKSSSA ASCGSGCCGV CCGQWMLAFW 480 VFMYLRMMGS A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-5 | 171 | 338 | 179 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-18 | 366 | 435 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-32 | 367 | 448 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-68 | 27 | 346 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ06546.1 | 0 | 27 | 464 | 36 | 473 | hypothetical protein OsI_28792 [Oryza sativa Indica Group] |
GenBank | EEC84224.1 | 0 | 23 | 490 | 21 | 487 | hypothetical protein OsI_30642 [Oryza sativa Indica Group] |
RefSeq | NP_001062739.1 | 0 | 24 | 490 | 22 | 487 | Os09g0272300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141759.1 | 0 | 22 | 491 | 23 | 492 | hypothetical protein LOC100273895 [Zea mays] |
RefSeq | XP_002459936.1 | 0 | 22 | 491 | 23 | 492 | hypothetical protein SORBIDRAFT_02g017290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 27 | 350 | 3 | 317 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
PDB | 3ur8_A | 0 | 27 | 350 | 3 | 317 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
PDB | 3ur7_B | 0 | 27 | 350 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 27 | 350 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 1.4013e-45 | 27 | 350 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |