y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00024858m |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43674.3 Isoelectric Point: 8.8853 |
Chromosome | Chromosome/Scaffold: 035924 Start: 3087 End: 5014 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 48 | 396 | 0 |
KAACGTAGAVTMLVPAGIYHIGPVQFHGPCKASTLTFQLQASRRSEIIINQLPDLQLGLTDIGSMGMRMRFGNDWIEFGWVNGLTVTGGTIDGQGAASWP FNKCPVRKDCKVLPTSVLFVNNQNTVVKDLTSVNPKFFHIALLSTKNIKMSGLKISAPSNSPNTDGIHIERSAGVYIMDTHIATGDDCISVGQGNDNVDV ARVQCGPGHGMSVGSLGRYAGEGDVTRVHIRDMTFTGTMNGVRIKTWENSPTKSNAAHMVFENLVMNDVQNPIIIDQKYCPYYNCEHKYVSGVTIKDIQF KNIKGTATTPVAVLLRCGVPCQGLVLQDVNLRYKGQGTVSAKCENAKAK |
Full Sequence |
---|
Protein Sequence Length: 408 Download |
MEARLALVVV VLLASAPAGG ANVFNAKNYG AKGNGVVDDT KPLMTTWKAA CGTAGAVTML 60 VPAGIYHIGP VQFHGPCKAS TLTFQLQASR RSEIIINQLP DLQLGLTDIG SMGMRMRFGN 120 DWIEFGWVNG LTVTGGTIDG QGAASWPFNK CPVRKDCKVL PTSVLFVNNQ NTVVKDLTSV 180 NPKFFHIALL STKNIKMSGL KISAPSNSPN TDGIHIERSA GVYIMDTHIA TGDDCISVGQ 240 GNDNVDVARV QCGPGHGMSV GSLGRYAGEG DVTRVHIRDM TFTGTMNGVR IKTWENSPTK 300 SNAAHMVFEN LVMNDVQNPI IIDQKYCPYY NCEHKYVSGV TIKDIQFKNI KGTATTPVAV 360 LLRCGVPCQG LVLQDVNLRY KGQGTVSAKC ENAKAKYVGV QLPKPCP* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-80 | 28 | 404 | 385 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-81 | 20 | 406 | 392 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-81 | 23 | 406 | 390 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-89 | 51 | 394 | 347 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 17 | 407 | 404 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83381.1 | 0 | 173 | 407 | 2 | 236 | hypothetical protein OsI_28796 [Oryza sativa Indica Group] |
GenBank | EEE68484.1 | 0 | 1 | 407 | 1 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
RefSeq | NP_001061556.1 | 0 | 1 | 407 | 1 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437842.1 | 0 | 25 | 406 | 32 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
RefSeq | XP_002444237.1 | 0 | 20 | 407 | 22 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-16 | 136 | 345 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000001 | 123 | 392 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000001 | 123 | 392 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000001 | 123 | 392 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000001 | 123 | 392 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |