y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00024965m |
Family | GT14 |
Protein Properties | Length: 413 Molecular Weight: 44029.5 Isoelectric Point: 6.0432 |
Chromosome | Chromosome/Scaffold: 036138 Start: 2873 End: 4302 |
Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT14 | 75 | 307 | 0 |
LAYYITGGHGDFVRVTRLLKAAYHPRNLYLLHLDAGAGAYERARLASYVRSERAFVEYGNVHVVGRGDALDGRGPSAVAAVLRGAAVLLRVGADWDWLVT LGAADYPLVTQDDLLHAFSSVPRDVSFIDHRADSESHHVVVLDQNLLQSTNAKLSISSGHREKPDAFELFRGSPWPILSRAFVEHCVAAPDNLPRTLLMY FSNTLDAAEFYFQTVMANSPRFRDSTVNHSVRF |
Full Sequence |
---|
Protein Sequence Length: 413 Download |
MAHSSWLTAC SPWSALATLA ALTTSLLVLS YVSSSLLHPA AYGYDDPYSP DAESPSPSAA 60 EALAPRKGPG YPPVLAYYIT GGHGDFVRVT RLLKAAYHPR NLYLLHLDAG AGAYERARLA 120 SYVRSERAFV EYGNVHVVGR GDALDGRGPS AVAAVLRGAA VLLRVGADWD WLVTLGAADY 180 PLVTQDDLLH AFSSVPRDVS FIDHRADSES HHVVVLDQNL LQSTNAKLSI SSGHREKPDA 240 FELFRGSPWP ILSRAFVEHC VAAPDNLPRT LLMYFSNTLD AAEFYFQTVM ANSPRFRDST 300 VNHSVRFDVP LPQGMDLRSR YDALVGSGAA FAGRFGDDEA LLQRIDEEVL RRPLDGVTPG 360 AWCAPGSGEE GSAAECSIGG DIDAVRQGAA GRRLASLISG LVGTGACGGC KS* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02485 | Branch | 3.0e-48 | 75 | 307 | 233 | + Core-2/I-Branching enzyme. This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. | ||
PLN03183 | PLN03183 | 1.0e-85 | 73 | 402 | 341 | + acetylglucosaminyltransferase family protein; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008375 | acetylglucosaminyltransferase activity |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR16364.1 | 0 | 67 | 404 | 67 | 412 | unknown [Picea sitchensis] |
RefSeq | NP_001044392.1 | 0 | 1 | 403 | 1 | 403 | Os01g0772500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131298.1 | 0 | 4 | 412 | 3 | 409 | hypothetical protein LOC100192611 [Zea mays] |
RefSeq | XP_002310932.1 | 0 | 62 | 403 | 31 | 383 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002458575.1 | 0 | 6 | 404 | 3 | 402 | hypothetical protein SORBIDRAFT_03g035990 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3otk_D | 0.0000005 | 70 | 357 | 83 | 389 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_C | 0.0000005 | 70 | 357 | 83 | 389 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_B | 0.0000005 | 70 | 357 | 83 | 389 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_A | 0.0000005 | 70 | 357 | 83 | 389 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 2gam_D | 0.0000006 | 70 | 357 | 83 | 389 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |