| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00025226m |
| Family | CE11 |
| Protein Properties | Length: 297 Molecular Weight: 32079.5 Isoelectric Point: 6.6595 |
| Chromosome | Chromosome/Scaffold: 036035 Start: 3556 End: 5941 |
| Description | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE11 | 26 | 297 | 0 |
| QQTLAATVSRSGVGLHSGARVTATLIPAHAGEGRYFLVDGEEEARVAAEVGNAEPRSQLCTTLRRGEGGGPRVRTVEHLLSAMEALGVDNCRVEVSGGDE IPLLDGSAQEWVEAIRSAGLCAAEDTSGQNLEKLAPQINEPVYLQRDDCFIAAFPSSRIRISYGIDFPKVPAIGCRWFSTYLDANIYSSKIAPARTFCIF EEIEKMRGAGLIKGGSLENAMVCSMSGGWLNPPVRFEDEPCRHKILDLIGDFSLLAQNGNQGFPIAHIVAYK | |||
| Full Sequence |
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| Protein Sequence Length: 297 Download |
| MSSAAARALK FVSRAALSWK PTRRPQQTLA ATVSRSGVGL HSGARVTATL IPAHAGEGRY 60 FLVDGEEEAR VAAEVGNAEP RSQLCTTLRR GEGGGPRVRT VEHLLSAMEA LGVDNCRVEV 120 SGGDEIPLLD GSAQEWVEAI RSAGLCAAED TSGQNLEKLA PQINEPVYLQ RDDCFIAAFP 180 SSRIRISYGI DFPKVPAIGC RWFSTYLDAN IYSSKIAPAR TFCIFEEIEK MRGAGLIKGG 240 SLENAMVCSM SGGWLNPPVR FEDEPCRHKI LDLIGDFSLL AQNGNQGFPI AHIVAYK 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK13188 | PRK13188 | 1.0e-59 | 26 | 297 | 303 | + bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed | ||
| TIGR00325 | lpxC | 5.0e-73 | 26 | 297 | 273 | + UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| COG0774 | LpxC | 1.0e-86 | 26 | 297 | 275 | + UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane] | ||
| pfam03331 | LpxC | 4.0e-87 | 26 | 297 | 273 | + UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. | ||
| PRK13186 | lpxC | 2.0e-101 | 26 | 297 | 274 | + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN52736.1 | 0 | 1 | 297 | 1 | 287 | Hypothetical protein [Oryza sativa Japonica Group] |
| GenBank | ABF94722.1 | 0 | 1 | 284 | 1 | 280 | UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEE58623.1 | 0 | 1 | 297 | 1 | 294 | hypothetical protein OsJ_09977 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049426.1 | 0 | 1 | 297 | 1 | 293 | Os03g0223900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002468246.1 | 0 | 1 | 297 | 1 | 297 | hypothetical protein SORBIDRAFT_01g042410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3uhm_A | 2e-35 | 26 | 283 | 4 | 252 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 3u1y_B | 2e-35 | 26 | 283 | 4 | 252 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 3u1y_A | 2e-35 | 26 | 283 | 4 | 252 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 3p3e_A | 2e-35 | 26 | 283 | 4 | 252 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 2ves_C | 2e-35 | 26 | 283 | 4 | 252 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | UDPACYLGLCNACDEACETYL-RXN | EC-3.5.1.108 | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HX136805 | 260 | 7 | 266 | 0 |
| CK207177 | 250 | 7 | 256 | 0 |
| CT850072 | 297 | 1 | 297 | 0 |
| CA246559 | 176 | 122 | 297 | 0 |
| CA238382 | 175 | 122 | 296 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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