Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00025674m |
Family | GH17 |
Protein Properties | Length: 302 Molecular Weight: 31321.3 Isoelectric Point: 4.4421 |
Chromosome | Chromosome/Scaffold: 024131 Start: 6415 End: 7658 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 2 | 300 | 0 |
SGDNLPPASTVVGMYKANGIPLMRIYAPDQAALQAVGGTGIRVVVGAPNDVLSSLAASPAAAASWVRNNIEAYPDVTFRCVCVGNEAEGGAAQDLVPAME NVRAALAAAGLDGIKVTTSVSQAILGGYKPPSAADFTAEAQGFMGPVLAFLARTGAPLMASVYPYFIYATNPSAMDLSYALFTAPGAVLQDGTYGYQNLF DATVDSFYVAMGKNGGSGVTLVVSESGWPSAGGVAASQENAALYNQNLINHVGRGTPRHPGAIETILFSMFNENLKESGVEQNWGLFYPNTQRVYPISF |
Full Sequence |
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Protein Sequence Length: 302 Download |
MSGDNLPPAS TVVGMYKANG IPLMRIYAPD QAALQAVGGT GIRVVVGAPN DVLSSLAASP 60 AAAASWVRNN IEAYPDVTFR CVCVGNEAEG GAAQDLVPAM ENVRAALAAA GLDGIKVTTS 120 VSQAILGGYK PPSAADFTAE AQGFMGPVLA FLARTGAPLM ASVYPYFIYA TNPSAMDLSY 180 ALFTAPGAVL QDGTYGYQNL FDATVDSFYV AMGKNGGSGV TLVVSESGWP SAGGVAASQE 240 NAALYNQNLI NHVGRGTPRH PGAIETILFS MFNENLKESG VEQNWGLFYP NTQRVYPISF 300 N* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-9 | 24 | 291 | 288 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 2.0e-124 | 1 | 300 | 305 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG36462.1 | 0 | 1 | 300 | 37 | 336 | lichenase-2 precursor [Zea mays] |
RefSeq | NP_001055377.1 | 0 | 1 | 300 | 35 | 334 | Os05g0375400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148461.1 | 0 | 1 | 300 | 37 | 336 | lichenase-2 [Zea mays] |
RefSeq | NP_001150348.1 | 0 | 1 | 301 | 36 | 336 | lichenase-2 [Zea mays] |
RefSeq | XP_002441003.1 | 0 | 1 | 301 | 37 | 337 | hypothetical protein SORBIDRAFT_09g018750 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 1 | 300 | 7 | 306 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 1aq0_B | 0 | 1 | 300 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 1 | 300 | 7 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 0 | 1 | 300 | 7 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 1 | 300 | 8 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL766305 | 237 | 66 | 302 | 0 |
FL753440 | 232 | 66 | 297 | 0 |
CB673940 | 269 | 1 | 269 | 0 |
CB654106 | 257 | 44 | 300 | 0 |
FL753440 | 21 | 282 | 302 | 0.00007 |
Sequence Alignments (This image is cropped. Click for full image.) |
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