| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00026181m |
| Family | GT5 |
| Protein Properties | Length: 909 Molecular Weight: 102669 Isoelectric Point: 6.3197 |
| Chromosome | Chromosome/Scaffold: 024491 Start: 10 End: 6784 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 416 | 898 | 0 |
| HIVHIAAEMAPVAKVGGLADVISGLGKALQKKGNLVEIILPKYDCMQHNQINNLKVLDVVVQSYFEGNMFANKIWTGTVEGLPIYFIEPQHPGKFFWRAQ YYGEHDDFKRFSYFSRVALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPAQDLAYCGLDVEHLDRPDRMRDNSHG RINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKIHSKKFVGILNGIDTDTWNPSTDRFLKVQYSANDLYGKSANKAALRKQLKMSSANASQPLV GCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPNIQREFEGIADQFKNNSNIRLLLKYDDALSHMIFAASDMFIVPSMFEPCGLTQMIAMRYGSV PVVRKTGGLNDSVFDFDDETIPIELRNGFTFSKADEQGFDSALERAFNYYHRKPEVWKQLVQKDMKIDFSWDTSASQYEDIYQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 909 Download |
| GGGGGGGAGA TALLCRRPAP SLIAGRNRLA VSRRPRHRNL RTGAQPPQKS TPSANYRYRV 60 NIQRDRAGAS SDDEDQQESE DENGLPNIQL EELVGMIQNT EKNILLLNQA RLQALERADK 120 ILKEKEALQQ EVNILEIKLS ETGAQPKLSS KGMSDAEALE FDVLKEENML LKDDITFFKA 180 KLIEITETEE SLFKLEKERA LLDASLRELE CAFIAAQSDM LKLGPMQHDA WWEKVENLEE 240 LLETTANQVE HAALILDGYH DFQDKVDKLE ASLGARNISE FCLYLVDLLK KRVKSIEEHF 300 QACNREMHSQ IELYEHSIVE FHDTLSKLIK ESEKKSMEHY AEGMPSEFWS RISLLIDGWS 360 LEKKISNNDA NILREMAWKR DNRLREAYLS SRGMAERELI DSFLKMALPG TSSGLHIVHI 420 AAEMAPVAKV GGLADVISGL GKALQKKGNL VEIILPKYDC MQHNQINNLK VLDVVVQSYF 480 EGNMFANKIW TGTVEGLPIY FIEPQHPGKF FWRAQYYGEH DDFKRFSYFS RVALELLYQS 540 GKKVDIIHCH DWQTAFVAPL YWDVYANLGF NSARICFTCH NFEYQGTAPA QDLAYCGLDV 600 EHLDRPDRMR DNSHGRINVV KGAIVYSNIV TTVSPTYAQE VRSEGGRGLQ DTLKIHSKKF 660 VGILNGIDTD TWNPSTDRFL KVQYSANDLY GKSANKAALR KQLKMSSANA SQPLVGCITR 720 LVPQKGVHLI RHAIYKTAEL GGQFVLLGSS PVPNIQREFE GIADQFKNNS NIRLLLKYDD 780 ALSHMIFAAS DMFIVPSMFE PCGLTQMIAM RYGSVPVVRK TGGLNDSVFD FDDETIPIEL 840 RNGFTFSKAD EQGFDSALER AFNYYHRKPE VWKQLVQKDM KIDFSWDTSA SQYEDIYQRA 900 AARARAAT* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 5.0e-146 | 415 | 897 | 490 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 16 | 898 | 948 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 415 | 898 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 416 | 898 | 486 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 415 | 898 | 485 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK97773.1 | 0 | 4 | 899 | 5 | 905 | starch synthase isoform IV [Triticum aestivum] |
| GenBank | ABD64538.1 | 0 | 4 | 899 | 5 | 905 | starch synthase IV [Triticum aestivum] |
| RefSeq | NP_001056142.1 | 0 | 13 | 898 | 14 | 905 | Os05g0533600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001123590.1 | 0 | 13 | 899 | 14 | 900 | starch synthase IV [Zea mays] |
| RefSeq | XP_002440128.1 | 0 | 13 | 898 | 14 | 899 | hypothetical protein SORBIDRAFT_09g026570 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 415 | 899 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 415 | 899 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 415 | 899 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 415 | 899 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 415 | 899 | 1 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO851132 | 331 | 490 | 820 | 0 |
| JG956717 | 266 | 445 | 710 | 0 |
| CB622719 | 296 | 494 | 789 | 0 |
| FL725385 | 260 | 522 | 781 | 0 |
| JG927258 | 276 | 452 | 727 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
