| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00026390m |
| Family | GH127 |
| Protein Properties | Length: 619 Molecular Weight: 68155 Isoelectric Point: 5.7314 |
| Chromosome | Chromosome/Scaffold: 024007 Start: 101 End: 5873 |
| Description | Putative glycosyl hydrolase of unknown function (DUF1680) |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH127 | 107 | 391 | 2.3e-22 |
| GAQMRYEVTGDPLYKQIATFFMDTINSSHSYATGGTSAGEFWTYPKHLAETLSTENEESCTTYNMLKISRNLFRWTKEIAYADYYERALINGVLSIQRGT NPGVMIYMLPQAPGHSKAVSYHGWGTKYDSFWCCYGTGIESFSKLGDSIYFEEKGDMPALNIIQYIPSTFNWKAAGLTVTQQIKTLSSSDLYLQVSLSIS TTTTSQSAKLNFRIPSWTFADGAGATLNDKDLGSLSPGSFLSITKQWNSEDHLSLRFPIRLRTEAIKDGRLEYASLQAVLFGPFV | |||
| Full Sequence |
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| Protein Sequence Length: 619 Download |
| MQGLLDQYTV AGNSKALDMV VKMANYFSDR VMNVIQKYSI ERHWESLNEE TGGMNDVLYQ 60 LYTITNDLKH LTLAHLFDKP CFLGLLAVQA DSISGFHSNT HIPVVIGAQM RYEVTGDPLY 120 KQIATFFMDT INSSHSYATG GTSAGEFWTY PKHLAETLST ENEESCTTYN MLKISRNLFR 180 WTKEIAYADY YERALINGVL SIQRGTNPGV MIYMLPQAPG HSKAVSYHGW GTKYDSFWCC 240 YGTGIESFSK LGDSIYFEEK GDMPALNIIQ YIPSTFNWKA AGLTVTQQIK TLSSSDLYLQ 300 VSLSISTTTT SQSAKLNFRI PSWTFADGAG ATLNDKDLGS LSPGSFLSIT KQWNSEDHLS 360 LRFPIRLRTE AIKDGRLEYA SLQAVLFGPF VLAGLSSGDW DAKAGNSSTI SDWITIVPSV 420 YNSQLVTFTQ VSNGKTFVLS SANGSLTMQE RPEVDGTDTA IHATFRAHPQ DSTELHDMYS 480 TTMKGASMLI EPFDLPGTVI TNNLTLSAQK GSDSLFNIVP GLDGNSNSVS LELGNKPGCF 540 LVTGVDYPAG TKIQVSCKSS LQSIGGILEQ AASFVQTAPL KQYHPISFIA MGVRRNFLLE 600 PLYSLRDEFY TVYFNIGA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3533 | COG3533 | 1.0e-51 | 1 | 399 | 403 | + Uncharacterized protein conserved in bacteria [Function unknown] | ||
| pfam07944 | DUF1680 | 2.0e-110 | 1 | 393 | 396 | + Putative glycosyl hydrolase of unknown function (DUF1680). The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One members of this family is annotated as a possible arabinosidase, but no references were found to back this. These proteins are related to a large family of glycosyl hydrolases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL52954.1 | 0 | 1 | 616 | 261 | 877 | unknown [Zea mays] |
| GenBank | EAY84862.1 | 0 | 1 | 618 | 274 | 891 | hypothetical protein OsI_06226 [Oryza sativa Indica Group] |
| RefSeq | NP_001046185.1 | 0 | 1 | 618 | 274 | 891 | Os02g0195500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001145969.1 | 0 | 1 | 616 | 261 | 877 | hypothetical protein LOC100279496 [Zea mays] |
| RefSeq | XP_002451716.1 | 0 | 1 | 618 | 271 | 888 | hypothetical protein SORBIDRAFT_04g006520 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO843439 | 350 | 64 | 413 | 0 |
| JG863940 | 268 | 352 | 619 | 0 |
| GO846656 | 344 | 233 | 576 | 0 |
| GT048358 | 338 | 239 | 576 | 0 |
| HO335748 | 251 | 369 | 619 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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