CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00026745m
FamilyCBM22
Protein PropertiesLength: 317 Molecular Weight: 35247.6 Isoelectric Point: 9.5817
ChromosomeChromosome/Scaffold: 0247871 Start: 271 End: 1862
DescriptionGlycosyl hydrolase family 10 protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
CBM22371531.1e-23
  IIRNADFSAGLQGWSAFGYGVVEEGASASGNRYAVARNRTRPYQSVSQKVYLQNDTHYTLTAWLQVSNGSADITAVVKTNGEFIHAGGVEARSGCWSILK
  GGFTAPAAGPAELYFES
GH102143171.8e-27
  RSGFPLGSAMSAEILHNPAYQQWFTSRFTVTTFENEMKWYSTERVQGSEDYSVPDAMLRFARSHGIRVRGHNIFWDQPSQQPAWVQSLPYQQLRQATARR
  IKSV
Full Sequence
Protein Sequence     Length: 317     Download
MPMAVRYAIT WTFHICRQLV GQTCLPEPLE PHYGGGIIRN ADFSAGLQGW SAFGYGVVEE    60
GASASGNRYA VARNRTRPYQ SVSQKVYLQN DTHYTLTAWL QVSNGSADIT AVVKTNGEFI    120
HAGGVEARSG CWSILKGGFT APAAGPAELY FESNATGEQV MVDNVSLQPF SQEEWAAHHH    180
AAIKSARKKT VRLRARDSAG KPVPGAQVRI EHVRSGFPLG SAMSAEILHN PAYQQWFTSR    240
FTVTTFENEM KWYSTERVQG SEDYSVPDAM LRFARSHGIR VRGHNIFWDQ PSQQPAWVQS    300
LPYQQLRQAT ARRIKSV 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam02018CBM_4_92.0e-935153129+
COG3693XynA2.0e-1124131779+
pfam00331Glyco_hydro_102.0e-20217317104+
smart00633Glyco_109.0e-2225031771+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
GO:0016798hydrolase activity, acting on glycosyl bonds
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankABF94510.1024317423351,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)]
GenBankACN31540.102431738330unknown [Zea mays]
GenBankEEC74705.102431742335hypothetical protein OsI_10421 [Oryza sativa Indica Group]
GenBankEEE58525.102431742335hypothetical protein OsJ_09814 [Oryza sativa Japonica Group]
RefSeqXP_002465685.102431746339hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1xyf_B0.00000000000521431711112A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
PDB1xyf_A0.00000000000521431711112A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
PDB1v6x_B0.00000000000521431711112A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
PDB1v6x_A0.00000000000521431711112A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
PDB1v6w_B0.00000000000521431711112A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
Metabolic Pathways
Pathway NameReactionECProtein Name
(1,4)-β-xylan degradation3.2.1.8-RXNEC-3.2.1.8endo-1,4-β-xylanase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
FL913878246242690
FL873328217242400
CN138573221242440
EG384751249633110
FL873328222462670.0002
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_011_00218.1.27.143Aquca_011_00219.1.49.165
Arabidopsis lyrata913024.46.162491295.46.161
Arabidopsis thalianaAT4G33840.1.46.161AT4G33830.1.47.162AT4G33860.1.46.161
Brachypodium distachyonBradi1g71040.1.54.172
Brassica rapaBra034585.47.155Bra034584.46.161Bra017609.141.256
Carica papayaevm.model.supercontig_106.45.53.168
Capsella rubellaCarubv10006586m.46.161
Citrus clementinaCiclev10030382m.52.167
Fragaria vescamrna28152.1-v1.0-hybrid.50.168
Glycine maxGlyma11g11200.1.73.188Glyma11g11220.1.35.152
Linum usitatissimumLus10020985.24.142Lus10033786.35.153Lus10014642.40.158
Malus domesticaMDP0000245498.55.170
Manihot esculentacassava4.1_021918m.41.156
Mimulus guttatusmgv1a003597m.49.165
Oryza sativaLOC_Os03g10478.1.55.172LOC_Os03g10440.1.51.167
Panicum virgatumPavirv00027101m.14.130Pavirv00026745m.37.153
Phaseolus vulgarisPhvul.011G033100.1.41.156
Picea abiesMA_429144g0010.58.183MA_10434167g0010MA_7941351g0010
Populus trichocarpaPotri.009G087900.1.27.142
Prunus persicappa021363m.43.158
Ricinus communis29812.m000195.44.159
Setaria italicaSi034867m.54.170Si034912m.47.163
Selaginella moellendorffii420481.76.197
Thellungiella halophilaThhalv10024995m.45.160Thhalv10027468m.47.162
Vitis viniferaGSVIVT01037833001.70.185GSVIVT01037825001.23.138
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny