| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00026758m |
| Family | GT5 |
| Protein Properties | Length: 703 Molecular Weight: 75768.5 Isoelectric Point: 6.5512 |
| Chromosome | Chromosome/Scaffold: 025039 Start: 698 End: 5367 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 212 | 695 | 0 |
| NIVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRRRYRVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNDIYGGERM DVLKRMILFCKAAVEVPWYAPCSGAVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFFTFDLPEHYIDHFKLYDPV GGDHSNVFAAGLKMADRVVTVSSGYLWELKTSEGGWGLHDIINQNDWKLQGIVNGIDMSEWNPAADVHLHSDGYTNYTFETLDTGKRLCKEALQRQLGLQ VRDDVPLIGFIGRLDHQKGVDIIADAIHWIAGQDAQLVMLGTGRPDLKDLLRRCEAEHRDKVRACVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFADAGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVL | |||
| Full Sequence |
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| Protein Sequence Length: 703 Download |
| MSRAIASSSS AFLLLVASSS PRRRRSRVGA ALRSYGYGGA GLRLHWAPRG PPRDAAPLVR 60 SAAAPGGGEG EEAAAAGESS TPKGVALQGS KAKAADSASP PKPVTSAPKQ RRSTASEYGA 120 LGSSSASTSA APVSEPPKSE SPAPVSETET DASAKVAEPK PAALDDAKES VGIAEPVEAK 180 ADAAAATEAA ASAADGSEDK EPGPLAGPNV MNIVVVASEC APFCKTGGLG DVVGALPKAL 240 ARRGHRVMVV IPRYGEYAEA RDLGVRRRYR VAGQDSEVTY FHSYIDGVDF VFIEAPPFRH 300 RHNDIYGGER MDVLKRMILF CKAAVEVPWY APCSGAVYGD GNLVFIANDW HTALLPVYLK 360 AYYRDNGLMQ YARSVLVIHN IAHQGRGPVD DFFTFDLPEH YIDHFKLYDP VGGDHSNVFA 420 AGLKMADRVV TVSSGYLWEL KTSEGGWGLH DIINQNDWKL QGIVNGIDMS EWNPAADVHL 480 HSDGYTNYTF ETLDTGKRLC KEALQRQLGL QVRDDVPLIG FIGRLDHQKG VDIIADAIHW 540 IAGQDAQLVM LGTGRPDLKD LLRRCEAEHR DKVRACVGFS VPMAHRITAG ADVLLMPSRF 600 EPCGLNQLYA MAYGTVPVVH AVGGLRDTVA PFDPFADAGL GWTFDRAEAN RMIDALGHCL 660 NTYRNYKESW RGLQARGMAQ DLSWDHAAEL YEDVLVKAKY QW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 9.0e-84 | 211 | 691 | 501 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 3.0e-135 | 211 | 693 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-166 | 211 | 695 | 497 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 211 | 698 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 212 | 695 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86845.1 | 0 | 1 | 702 | 1 | 704 | starch synthase IIb precursor [Sorghum bicolor] |
| GenBank | ACN31779.1 | 0 | 1 | 702 | 1 | 698 | unknown [Zea mays] |
| RefSeq | NP_001104880.1 | 0 | 1 | 702 | 1 | 698 | starch synthase isoform zSTSII-2 [Zea mays] |
| RefSeq | NP_001106014.1 | 0 | 28 | 702 | 29 | 704 | starch synthase IIb-2 precursor [Zea mays] |
| RefSeq | XP_002452556.1 | 0 | 1 | 702 | 1 | 704 | hypothetical protein SORBIDRAFT_04g028060 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 211 | 696 | 10 | 509 | A Chain A, A Structural Basis For The Allosteric Regulation Of Non- Hydrolyzing Udp-Glcnac 2-Epimerases |
| PDB | 3vue_A | 0 | 211 | 696 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 211 | 699 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 211 | 701 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 211 | 701 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO777841 | 312 | 392 | 703 | 0 |
| HO777841 | 195 | 198 | 392 | 0 |
| HO781048 | 394 | 310 | 703 | 0 |
| HO445868 | 438 | 266 | 703 | 0 |
| HO781048 | 38 | 273 | 310 | 2.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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