y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00027041m |
Family | GT47 |
Protein Properties | Length: 374 Molecular Weight: 42174.1 Isoelectric Point: 8.6886 |
Chromosome | Chromosome/Scaffold: 0247532 Start: 1 End: 1122 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 104 | 354 | 2.20004e-43 |
CRGRYVYMHDLPPRFNADIIRNCRKTEDHWADMCRFLRNDGLGRPLADRIDGVIKSEAGWYDTHQFALDAIFHNRMKQYECLTTDSAEASAVFVPFYAGF DFVRYHWGYDNATRDAASVDLTEWLMARPEWRRMGGRDHFLVAGRTGWDFRRSNNVDPDWGNDLLVMPAGRNMSVLVLESAMLHGSDYPVPYPTYFHPRS DADVLRWQDRVRAQRRTWLMAFVGAPRPDVPINIRVRDHVIAQCKATGACT |
Full Sequence |
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Protein Sequence Length: 374 Download |
MERVGAHGGK RWLPRLLLLA ALSWLLMVYL HAAVFHAPAV RSPPHTSLVA VASDCEDCRR 60 FLLRQEEQLK KIASASSSAS ASALPAAAGE DRRRPRTVGG GDACRGRYVY MHDLPPRFNA 120 DIIRNCRKTE DHWADMCRFL RNDGLGRPLA DRIDGVIKSE AGWYDTHQFA LDAIFHNRMK 180 QYECLTTDSA EASAVFVPFY AGFDFVRYHW GYDNATRDAA SVDLTEWLMA RPEWRRMGGR 240 DHFLVAGRTG WDFRRSNNVD PDWGNDLLVM PAGRNMSVLV LESAMLHGSD YPVPYPTYFH 300 PRSDADVLRW QDRVRAQRRT WLMAFVGAPR PDVPINIRVR DHVIAQCKAT GACTMLGCAR 360 ATGSTQCHTP GNIM 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 6.0e-39 | 103 | 374 | 279 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17347.1 | 0 | 102 | 374 | 227 | 495 | Hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EEE58313.1 | 0 | 102 | 374 | 261 | 529 | hypothetical protein OsJ_09380 [Oryza sativa Japonica Group] |
RefSeq | NP_001048943.1 | 0 | 101 | 374 | 82 | 351 | Os03g0144300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002468519.1 | 0 | 100 | 374 | 47 | 321 | hypothetical protein SORBIDRAFT_01g047290 [Sorghum bicolor] |
RefSeq | XP_002468520.1 | 0 | 100 | 374 | 52 | 328 | hypothetical protein SORBIDRAFT_01g047300 [Sorghum bicolor] |