| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00027101m |
| Family | CBM22 |
| Protein Properties | Length: 320 Molecular Weight: 35720.9 Isoelectric Point: 9.1951 |
| Chromosome | Chromosome/Scaffold: 0252636 Start: 2 End: 1173 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 14 | 130 | 8e-24 |
| IIWNSDFSAGLQGWSAFGYGVVEEGASASGNRYAVSRNRTRPYQSVSQKVYLQNDTHYTLSAWLQVSNGSADITAVVKTNGEFIHAGGVEARSGCWSILK GGFTAPAAGPAELYFES | |||
| GH10 | 191 | 313 | 6.9e-39 |
| RSGFPLGSAMSAEILQNPAYQRWFTSRFTVTTFENEMKWYSTERVQGREDYSVPDAMLRFARSHGIRVRGHNIFWDQPSQQPAWVQSLSYPQLRQATARR IKSVMSRYAGQVIAWDVVNENLH | |||
| Full Sequence |
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| Protein Sequence Length: 320 Download |
| CLPEPLEPHY GGGIIWNSDF SAGLQGWSAF GYGVVEEGAS ASGNRYAVSR NRTRPYQSVS 60 QKVYLQNDTH YTLSAWLQVS NGSADITAVV KTNGEFIHAG GVEARSGCWS ILKGGFTAPA 120 AGPAELYFES NATGEEVMVD NVSLQPFSQE EWAAHHHAAI KSARKKTVRL RARDSAGKPV 180 PGAQVRIEHV RSGFPLGSAM SAEILQNPAY QRWFTSRFTV TTFENEMKWY STERVQGRED 240 YSVPDAMLRF ARSHGIRVRG HNIFWDQPSQ QPAWVQSLSY PQLRQATARR IKSVMSRYAG 300 QVIAWDVVNE NLHFNFFEGR |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 8.0e-9 | 12 | 130 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-22 | 218 | 313 | 98 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-33 | 194 | 313 | 123 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-36 | 227 | 315 | 92 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 1 | 320 | 42 | 361 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACN31540.1 | 0 | 1 | 320 | 38 | 356 | unknown [Zea mays] |
| GenBank | EEC74705.1 | 0 | 1 | 320 | 42 | 361 | hypothetical protein OsI_10421 [Oryza sativa Indica Group] |
| GenBank | EEE58525.1 | 0 | 1 | 320 | 42 | 361 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 1 | 320 | 46 | 365 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyf_B | 6e-20 | 191 | 320 | 11 | 138 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1xyf_A | 6e-20 | 191 | 320 | 11 | 138 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_B | 6e-20 | 191 | 320 | 11 | 138 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6x_A | 6e-20 | 191 | 320 | 11 | 138 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| PDB | 1v6w_B | 6e-20 | 191 | 320 | 11 | 138 | A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL913878 | 246 | 1 | 246 | 0 |
| FL873328 | 217 | 1 | 217 | 0 |
| CN138573 | 221 | 1 | 221 | 0 |
| EG384751 | 249 | 40 | 288 | 0 |
| FL873328 | 22 | 223 | 244 | 0.001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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