y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00027329m |
Family | GH28 |
Protein Properties | Length: 436 Molecular Weight: 46150.8 Isoelectric Point: 9.429 |
Chromosome | Chromosome/Scaffold: 0252195 Start: 208 End: 1803 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 436 | 0 |
WKAACASPRPAIVLVPGGRRYLLKLVTLHGPCRSGVTLTVKGTLVASPNRADWSDRDRRLWIVFRSVHKLIVNGGGTIDGNGNKWWPHSCKINKALPCKE APTALSFHFCTNLRVEDLKIVNSQQIHVSVEDCTNAHLARLSITAPGTSPNTDGIHITRSKDVKVTDCKIKTGDDCISIEHGTHNLHVSKVVCGPGHGIS IGSLGDDNSRAEVSGIIIDTVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMYNVKNPIIIDQNYCDKNKPCKEQRSAVEVSNVVFKNIRGTTITKDAIK LKC |
Full Sequence |
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Protein Sequence Length: 436 Download |
MASPRLVFVA PLLALLVVPA GALESAGGTT TNGTSPEGAS SLGVLSLDRY GGDALAALTL 60 ASRLVFAAPL LAWLFAPGAL EAPGTTNGTS VDGAAAAAAG TRARPLGSSV FALDRYGARG 120 DGRHDDTQAL ARAWKAACAS PRPAIVLVPG GRRYLLKLVT LHGPCRSGVT LTVKGTLVAS 180 PNRADWSDRD RRLWIVFRSV HKLIVNGGGT IDGNGNKWWP HSCKINKALP CKEAPTALSF 240 HFCTNLRVED LKIVNSQQIH VSVEDCTNAH LARLSITAPG TSPNTDGIHI TRSKDVKVTD 300 CKIKTGDDCI SIEHGTHNLH VSKVVCGPGH GISIGSLGDD NSRAEVSGII IDTVQLYGTT 360 NGARIKTYQG GSGYAKDITF QNMIMYNVKN PIIIDQNYCD KNKPCKEQRS AVEVSNVVFK 420 NIRGTTITKD AIKLKC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-90 | 115 | 436 | 324 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-92 | 107 | 436 | 333 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 5.0e-106 | 138 | 436 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-130 | 109 | 436 | 330 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-132 | 102 | 436 | 335 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 75 | 436 | 27 | 393 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 97 | 436 | 76 | 431 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 84 | 436 | 12 | 387 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 79 | 436 | 20 | 386 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 63 | 436 | 11 | 401 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-23 | 205 | 426 | 113 | 337 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 208 | 434 | 77 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 208 | 434 | 77 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 208 | 434 | 77 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 208 | 434 | 77 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |