| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00027681m |
| Family | AA1 |
| Protein Properties | Length: 328 Molecular Weight: 35961.4 Isoelectric Point: 6.0297 |
| Chromosome | Chromosome/Scaffold: 0355742 Start: 2 End: 1105 |
| Description | laccase 14 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 1 | 328 | 0 |
| VNVYNQGNKNITLHWHGVDQPRNPWFDGPEYITQCPIQPGANFTYRIIFSEEEGTVWWHAHSDFDRATVHGAIVVHPKRGSAYPYTKPHKEMPIILGEWW NVDVQQLLEETMRTGSDVNISDANTINGQPGDLFPCSKNGTFRMPVEHGKTYLLRIINAGLTNEMFFGVAGHRLTVVGTDGRYLKPFTVDHIMISPGQTM NALLEADRPTDGSGNSRYYMAARTFATNSQLSVNNSTATAILEYTDAPPSAGPPDLPRLPAVGDIAAATAYTAQLRSLVTKDHPVDVPTHVDEHMLVTIA VNLLPCGANETCAGPIDGTTRLAASLNN | |||
| Full Sequence |
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| Protein Sequence Length: 328 Download |
| VNVYNQGNKN ITLHWHGVDQ PRNPWFDGPE YITQCPIQPG ANFTYRIIFS EEEGTVWWHA 60 HSDFDRATVH GAIVVHPKRG SAYPYTKPHK EMPIILGEWW NVDVQQLLEE TMRTGSDVNI 120 SDANTINGQP GDLFPCSKNG TFRMPVEHGK TYLLRIINAG LTNEMFFGVA GHRLTVVGTD 180 GRYLKPFTVD HIMISPGQTM NALLEADRPT DGSGNSRYYM AARTFATNSQ LSVNNSTATA 240 ILEYTDAPPS AGPPDLPRLP AVGDIAAATA YTAQLRSLVT KDHPVDVPTH VDEHMLVTIA 300 VNLLPCGANE TCAGPIDGTT RLAASLNN |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07732 | Cu-oxidase_3 | 2.0e-31 | 1 | 80 | 82 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| PLN02604 | PLN02604 | 9.0e-33 | 9 | 257 | 277 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 2.0e-34 | 1 | 277 | 304 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| pfam00394 | Cu-oxidase | 1.0e-35 | 90 | 244 | 159 | + Multicopper oxidase. Many of the proteins in this family contain multiple similar copies of this plastocyanin-like domain. | ||
| TIGR03389 | laccase | 8.0e-146 | 1 | 328 | 328 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001068513.1 | 0 | 1 | 328 | 76 | 409 | Os11g0696900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001105915.1 | 0 | 1 | 328 | 80 | 407 | putative laccase [Zea mays] |
| RefSeq | XP_002452548.1 | 0 | 1 | 328 | 88 | 413 | hypothetical protein SORBIDRAFT_04g027860 [Sorghum bicolor] |
| RefSeq | XP_002452900.1 | 0 | 7 | 328 | 79 | 401 | hypothetical protein SORBIDRAFT_04g034610 [Sorghum bicolor] |
| RefSeq | XP_002452901.1 | 0 | 7 | 328 | 90 | 408 | hypothetical protein SORBIDRAFT_04g034620 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2hrh_A | 6e-24 | 9 | 253 | 59 | 318 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2hrg_A | 6e-24 | 9 | 253 | 59 | 318 | A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii Complexed With P-Methylbenzoate |
| PDB | 4a2h_A | 1e-23 | 9 | 249 | 59 | 285 | A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii Complexed With P-Methylbenzoate |
| PDB | 4a2g_A | 1e-23 | 9 | 249 | 59 | 285 | A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii Complexed With P-Methylbenzoate |
| PDB | 4a2e_A | 1e-23 | 9 | 249 | 59 | 285 | A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii Complexed With P-Methylbenzoate |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EE185313 | 246 | 1 | 246 | 0 |
| EE184570 | 257 | 59 | 315 | 0 |
| EB664311 | 235 | 10 | 243 | 0 |
| CA275768 | 185 | 1 | 185 | 0 |
| EH772337 | 283 | 6 | 288 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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