| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00027786m |
| Family | AA1 |
| Protein Properties | Length: 318 Molecular Weight: 35345.1 Isoelectric Point: 8.6017 |
| Chromosome | Chromosome/Scaffold: 035301 Start: 220 End: 1173 |
| Description | Cupredoxin superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 86 | 295 | 3.60134e-43 |
| WNDTMYRFQQSVATVAHPAHVDPPPPRADRIILLLNTQNKIDGRIKWALNNVSFRLPHTPYLVAMKRGLLGAFDQRPPPEKYAHQTYDIYAKPPNPNATT SDGLYRLRFGSVVDVVLQNANMLDDNKSETHPWHLHGHDFWVLGYGIGRFDPAVHPATYNLRDPILKNTVAVHPYGWTALRFKADNPGVWAFHCHIEAHF FMGMGVVFEE | |||
| Full Sequence |
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| Protein Sequence Length: 318 Download |
| MQGHPMTVVE ADGHYVKPFV VDSLSIYSGE TYSVLIKADQ DPNRNYWLAS NVVSRQPGTP 60 TGTAVLSYLG ASRSPPPTPP PAGRAWNDTM YRFQQSVATV AHPAHVDPPP PRADRIILLL 120 NTQNKIDGRI KWALNNVSFR LPHTPYLVAM KRGLLGAFDQ RPPPEKYAHQ TYDIYAKPPN 180 PNATTSDGLY RLRFGSVVDV VLQNANMLDD NKSETHPWHL HGHDFWVLGY GIGRFDPAVH 240 PATYNLRDPI LKNTVAVHPY GWTALRFKAD NPGVWAFHCH IEAHFFMGMG VVFEEGIERV 300 AELPREITGC GKTKGGH* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07731 | Cu-oxidase_2 | 3.0e-38 | 158 | 299 | 143 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| TIGR03389 | laccase | 1.0e-59 | 3 | 293 | 313 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| PLN02191 | PLN02191 | 1.0e-111 | 1 | 314 | 315 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 3.0e-167 | 1 | 315 | 316 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 4.0e-178 | 1 | 313 | 314 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27982.1 | 0 | 1 | 317 | 249 | 569 | unknown [Zea mays] |
| RefSeq | NP_001063005.1 | 0 | 1 | 317 | 256 | 577 | Os09g0365900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002462284.1 | 0 | 1 | 317 | 251 | 570 | hypothetical protein SORBIDRAFT_02g023140 [Sorghum bicolor] |
| RefSeq | XP_002462285.1 | 0 | 1 | 317 | 252 | 571 | hypothetical protein SORBIDRAFT_02g023150 [Sorghum bicolor] |
| RefSeq | XP_002462286.1 | 0 | 1 | 317 | 264 | 579 | hypothetical protein SORBIDRAFT_02g023160 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 4 | 313 | 234 | 541 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate |
| PDB | 1asq_A | 0 | 4 | 313 | 234 | 541 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate |
| PDB | 1asp_B | 0 | 4 | 313 | 234 | 541 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate |
| PDB | 1asp_A | 0 | 4 | 313 | 234 | 541 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate |
| PDB | 1aso_B | 0 | 4 | 313 | 234 | 541 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CX611873 | 195 | 117 | 311 | 0 |
| DV705515 | 301 | 1 | 300 | 0 |
| CX606134 | 191 | 121 | 311 | 0 |
| GR346379 | 269 | 41 | 306 | 0 |
| GR346379 | 43 | 268 | 310 | 0.001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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