| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00028280m |
| Family | GH28 |
| Protein Properties | Length: 107 Molecular Weight: 10937.4 Isoelectric Point: 7.7256 |
| Chromosome | Chromosome/Scaffold: 0297886 Start: 823 End: 1343 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 1 | 87 | 3.5e-22 |
| MKNVSNPIIIDQYYCDQPTPCANQTRAVEVRDVGFADIRGTSATAQAISIACSDAVPCRDLELKNVNLTLEGGGGGGRATASCYRAY | |||
| Full Sequence |
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| Protein Sequence Length: 107 Download |
| MKNVSNPIII DQYYCDQPTP CANQTRAVEV RDVGFADIRG TSATAQAISI ACSDAVPCRD 60 LELKNVNLTL EGGGGGGRAT ASCYRAYGKS AGAVVPPSCL AKPTAS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-18 | 1 | 96 | 96 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-20 | 1 | 99 | 99 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-21 | 1 | 102 | 102 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-21 | 1 | 99 | 99 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-34 | 1 | 101 | 102 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 1 | 102 | 310 | 410 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 1 | 102 | 306 | 406 | unknown [Zea mays] |
| GenBank | ACR38523.1 | 0 | 1 | 102 | 281 | 381 | unknown [Zea mays] |
| RefSeq | NP_001151886.1 | 0 | 1 | 102 | 310 | 410 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 1 | 102 | 308 | 407 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FE624059 | 101 | 7 | 107 | 0 |
| EB407081 | 102 | 1 | 102 | 0 |
| EB640034 | 102 | 1 | 102 | 0 |
| DW468322 | 102 | 1 | 102 | 0 |
| DY240023 | 102 | 1 | 102 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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