| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00028285m |
| Family | GH28 |
| Protein Properties | Length: 222 Molecular Weight: 22996.3 Isoelectric Point: 7.6831 |
| Chromosome | Chromosome/Scaffold: 029450 Start: 6884 End: 7618 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 71 | 217 | 1e-34 |
| TSACGGTGKQKIMIPKGDFLVGPLNFTGPCKGDVTIQLDGNLLATTDLSQYKANWIEILRVDNLVITGKGKLDGQGPAVWGKNSCAKKYDCKILPNSLVL DFVNNGEVSGITLLNSKFFHMNVFQCKDMVIKDVTVTAPGDSPNTDG | |||
| Full Sequence |
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| Protein Sequence Length: 222 Download |
| MAFPNNTVLR AIFLLVLVSV AHAGGKAKES SSAPAEGGGG SCDGGTCDIT KMGATAGGKT 60 DCTKAVQEAW TSACGGTGKQ KIMIPKGDFL VGPLNFTGPC KGDVTIQLDG NLLATTDLSQ 120 YKANWIEILR VDNLVITGKG KLDGQGPAVW GKNSCAKKYD CKILPNSLVL DFVNNGEVSG 180 ITLLNSKFFH MNVFQCKDMV IKDVTVTAPG DSPNTDGSPH G* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-25 | 49 | 217 | 176 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-25 | 49 | 217 | 172 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-27 | 49 | 217 | 176 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-47 | 74 | 217 | 144 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-47 | 53 | 217 | 167 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA40910.1 | 0 | 6 | 221 | 1 | 213 | polygalacturonase [Zea mays] |
| EMBL | CAA44248.1 | 0 | 1 | 221 | 1 | 217 | polygalacturonase [Zea mays] |
| EMBL | CAA46680.1 | 0 | 1 | 221 | 1 | 217 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 221 | 1 | 217 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | XP_002437275.1 | 0 | 9 | 221 | 8 | 217 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0.00007 | 47 | 217 | 28 | 240 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.00007 | 47 | 217 | 28 | 240 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.00007 | 47 | 217 | 28 | 240 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0.00007 | 47 | 217 | 28 | 240 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1rmg_A | 0.0005 | 46 | 206 | 20 | 168 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 23 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL764113 | 217 | 1 | 217 | 0 |
| FL820095 | 217 | 1 | 217 | 0 |
| FL757313 | 210 | 8 | 217 | 0 |
| FL798872 | 210 | 8 | 217 | 0 |
| FL749219 | 221 | 1 | 221 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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