Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00028286m |
Family | GH28 |
Protein Properties | Length: 225 Molecular Weight: 23500.8 Isoelectric Point: 7.1725 |
Chromosome | Chromosome/Scaffold: 029450 Start: 16 End: 1113 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 213 | 0 |
NVFQCKDMVIKDVTVTAPGDSPNTDGIHMGDSSGVTISNTVIGVGDDCISIGPGTTKVNITGVTCGPGHGISIGSLGRYKDEKDVTDITVKDCTLKKSTN GLRIKAYEDAKSVLTASKIHYENIKMEDAANPIIIDMKYCPNKICTASGDSKVTVKDVSFKNVTGTSSTPEAVSLLCSDKIPCSGVTMDNVKVEYSGKNN KTMAVCNNAKGS |
Full Sequence |
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Protein Sequence Length: 225 Download |
MNVFQCKDMV IKDVTVTAPG DSPNTDGIHM GDSSGVTISN TVIGVGDDCI SIGPGTTKVN 60 ITGVTCGPGH GISIGSLGRY KDEKDVTDIT VKDCTLKKST NGLRIKAYED AKSVLTASKI 120 HYENIKMEDA ANPIIIDMKY CPNKICTASG DSKVTVKDVS FKNVTGTSST PEAVSLLCSD 180 KIPCSGVTMD NVKVEYSGKN NKTMAVCNNA KGSSTGCLKE LACL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-53 | 1 | 224 | 224 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-53 | 1 | 210 | 210 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-59 | 6 | 224 | 220 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-76 | 1 | 216 | 216 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-79 | 1 | 211 | 211 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PIR | 0 | 1 | 224 | 140 | 363 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
EMBL | CAA40910.1 | 0 | 1 | 224 | 183 | 406 | polygalacturonase [Zea mays] |
RefSeq | NP_001105432.1 | 0 | 1 | 224 | 187 | 410 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001105862.1 | 0 | 1 | 224 | 187 | 410 | exopolygalacturonase precursor [Zea mays] |
RefSeq | XP_002437275.1 | 0 | 1 | 224 | 187 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-18 | 5 | 209 | 129 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 5 | 209 | 129 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 5 | 209 | 129 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 5 | 209 | 129 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-18 | 5 | 209 | 129 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL752313 | 215 | 11 | 225 | 0 |
FL806437 | 206 | 20 | 225 | 0 |
FL770721 | 225 | 1 | 225 | 0 |
JG879063 | 199 | 27 | 225 | 0 |
FL820096 | 191 | 35 | 225 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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