y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00028598m |
Family | GH28 |
Protein Properties | Length: 455 Molecular Weight: 47795 Isoelectric Point: 7.922 |
Chromosome | Chromosome/Scaffold: 030090 Start: 3458 End: 5269 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 93 | 438 | 0 |
CSSANSSAQPAVVLVPAGRSYLLKETSLSGPCKSRVTFRLEGTLVAPEDKSGWGKPGSLPRWIIFRGVDGLIVTGEGAMDGRGASSWKNSCRTNHAMPCT VAPSALTFASCDHLVVDGITLLNAPQIHLWVELCRDVTLSRLTIASPGDSPENDGIHVARSDGVRILGARIGAGDDCLSVATGTANLYAAGIECGPGHGI SIGSLGRWNSRAEVSNVTVDGATVSGTMFGARIKTWQGGSGFVRGVRFLNMAMDRVRYPILIDQNYCTRPHPSDTTACDHQESRSSAVEVSNVVFGNIWG TAVARDAIRLHCSEAFPCRDVVLRDVQLRTRKGGEKNAATSSCENA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MASRTLLATA CLVVLLLLTL GGAPVEARRR PRWPHYREVA PGHGLSTTAN APESSSVDGY 60 AYATTIDVGG FGAAGDGKTD GTAAFQKAWA EACSSANSSA QPAVVLVPAG RSYLLKETSL 120 SGPCKSRVTF RLEGTLVAPE DKSGWGKPGS LPRWIIFRGV DGLIVTGEGA MDGRGASSWK 180 NSCRTNHAMP CTVAPSALTF ASCDHLVVDG ITLLNAPQIH LWVELCRDVT LSRLTIASPG 240 DSPENDGIHV ARSDGVRILG ARIGAGDDCL SVATGTANLY AAGIECGPGH GISIGSLGRW 300 NSRAEVSNVT VDGATVSGTM FGARIKTWQG GSGFVRGVRF LNMAMDRVRY PILIDQNYCT 360 RPHPSDTTAC DHQESRSSAV EVSNVVFGNI WGTAVARDAI RLHCSEAFPC RDVVLRDVQL 420 RTRKGGEKNA ATSSCENALL GESTNVSPPP CSSGR 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-82 | 87 | 445 | 360 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-86 | 51 | 451 | 404 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 98 | 444 | 347 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-101 | 87 | 453 | 368 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-103 | 87 | 448 | 364 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC57273.1 | 0 | 66 | 438 | 53 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
DDBJ | BAC57279.1 | 0 | 66 | 453 | 53 | 425 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAZ39077.1 | 0 | 66 | 438 | 53 | 410 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 66 | 453 | 53 | 425 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002466242.1 | 0 | 71 | 453 | 80 | 450 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-18 | 105 | 443 | 26 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-18 | 105 | 443 | 26 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-18 | 105 | 443 | 26 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-18 | 105 | 443 | 26 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-18 | 105 | 443 | 26 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |