| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00028658m |
| Family | GH5 |
| Protein Properties | Length: 511 Molecular Weight: 57257.6 Isoelectric Point: 4.6426 |
| Chromosome | Chromosome/Scaffold: 030131 Start: 3389 End: 7054 |
| Description | |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH5 | 227 | 497 | 2.24208e-44 |
| EHRTSFITASDFDFLSRHGINTVRIPVGWWITQDPYPPSPFVGGSLAALDLAFSWAQSYGLKCIIDLHAAPGSQNGMEHSASRDGSVDWPSPEYVSQTLE VIDFLATRYGGHPSLLGIELLNEPSAATVPLDVLVSYYTRGYQIVRNHSTTAYVILCQRIGNADPIELFQAGIGLSNVVVDLHYYNLFDPYFASMNSTQN IEFIYKNRAPQLQALKDANGPLLFIGEWVNEWDVQNASQYEYQKFGRAQLDVYANATFGWSYWTLKNDKMH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 511 Download |
| MGGLVGPGFV LLSWVLFSPC LCSVDGLSKV RAVNLGGWLV VEGWIKPSLF DGIPNGDMLV 60 GGLILVIHFV FLDGTQVQLR SVVLNKYVSA ANGGGSNVTV ESDVASTWET FRLWRVSENE 120 FQLRCLGGEF LTSNSEDGLI LATAREPLST ETFYVERNDE RVHIKLLNGG YVQATNDHLL 180 ISTYQFRPGW DNNLATFELV IVANDLHGDY QLANGYGYER AKMVLEEHRT SFITASDFDF 240 LSRHGINTVR IPVGWWITQD PYPPSPFVGG SLAALDLAFS WAQSYGLKCI IDLHAAPGSQ 300 NGMEHSASRD GSVDWPSPEY VSQTLEVIDF LATRYGGHPS LLGIELLNEP SAATVPLDVL 360 VSYYTRGYQI VRNHSTTAYV ILCQRIGNAD PIELFQAGIG LSNVVVDLHY YNLFDPYFAS 420 MNSTQNIEFI YKNRAPQLQA LKDANGPLLF IGEWVNEWDV QNASQYEYQK FGRAQLDVYA 480 NATFGWSYWT LKNDKMHWDF EWNIQNKYLL F |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PTZ00130 | PTZ00130 | 0.005 | 417 | 475 | 59 | + heat shock protein 90; Provisional | ||
| cd00257 | Fascin | 0.001 | 75 | 179 | 107 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
| pfam00150 | Cellulase | 5.0e-16 | 213 | 494 | 286 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG2730 | BglC | 2.0e-25 | 206 | 511 | 346 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ07396.1 | 0 | 23 | 510 | 24 | 511 | hypothetical protein OsI_29647 [Oryza sativa Indica Group] |
| RefSeq | NP_001062079.1 | 0 | 23 | 510 | 24 | 511 | Os08g0484100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002262875.1 | 0 | 8 | 509 | 58 | 548 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002438060.1 | 0 | 1 | 511 | 1 | 511 | hypothetical protein SORBIDRAFT_10g007500 [Sorghum bicolor] |
| RefSeq | XP_002533566.1 | 0 | 20 | 511 | 4 | 487 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1eqp_A | 1e-30 | 197 | 501 | 29 | 370 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
| PDB | 2pb1_A | 2e-30 | 197 | 501 | 35 | 376 | A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Unhydrolysed And Covalently Linked 2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside At 1.9 A |
| PDB | 2pb1_A | 0.004 | 30 | 90 | 15 | 73 | A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Unhydrolysed And Covalently Linked 2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside At 1.9 A |
| PDB | 2pc8_A | 2e-30 | 197 | 501 | 35 | 376 | A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans In Complex With Two Separately Bound Glucopyranoside Units At 1.8 A |
