Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00028804m |
Family | CE8 |
Protein Properties | Length: 329 Molecular Weight: 36343.1 Isoelectric Point: 8.1666 |
Chromosome | Chromosome/Scaffold: 029702 Start: 271 End: 2451 |
Description | pectin methylesterase 31 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 23 | 308 | 0 |
GEAFPTVQAAVDAVPLGNRARVVIRLAPGVYREPVYVAKTKSFITLAGAAGGPEATVVSWDNTATRIKHSQSSRVIGTGTFGCGTFIVEGEDFIAENITF ENSAPQGSGQAVAVRVTADRCAFYSCRFLGWQDTLYLHYGKQYLRNCYIEGHCDFIFGNSVALMEHCHIHCKAAGYITAHSRKSTSETTGYVFLRCIITG NGEAGYMFLGRPWGPFGRVVFAHTFMDRCIKPSGWHNWDKSENERTACFYEYRCSGPGSRSSNRVAWCRQLLDVEAEHFLSHTFID |
Full Sequence |
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Protein Sequence Length: 329 Download |
MAQSQQQQGR RVLQVAPPGK GDGEAFPTVQ AAVDAVPLGN RARVVIRLAP GVYREPVYVA 60 KTKSFITLAG AAGGPEATVV SWDNTATRIK HSQSSRVIGT GTFGCGTFIV EGEDFIAENI 120 TFENSAPQGS GQAVAVRVTA DRCAFYSCRF LGWQDTLYLH YGKQYLRNCY IEGHCDFIFG 180 NSVALMEHCH IHCKAAGYIT AHSRKSTSET TGYVFLRCII TGNGEAGYMF LGRPWGPFGR 240 VVFAHTFMDR CIKPSGWHNW DKSENERTAC FYEYRCSGPG SRSSNRVAWC RQLLDVEAEH 300 FLSHTFIDPD LDRPWLLQMM STRIPASA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 1.0e-79 | 15 | 310 | 312 | + Pectinesterase. | ||
PLN02665 | PLN02665 | 4.0e-86 | 10 | 317 | 316 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-89 | 12 | 308 | 299 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-103 | 18 | 308 | 298 | + pectinesterase family protein | ||
PLN02773 | PLN02773 | 0 | 10 | 328 | 319 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY78435.1 | 0 | 6 | 328 | 3 | 336 | hypothetical protein OsI_33526 [Oryza sativa Indica Group] |
RefSeq | NP_001064567.1 | 0 | 6 | 328 | 3 | 336 | Os10g0407000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151351.1 | 0 | 4 | 328 | 2 | 324 | pectinesterase-1 [Zea mays] |
RefSeq | XP_002283941.1 | 0 | 11 | 328 | 4 | 316 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002464636.1 | 0 | 1 | 328 | 57 | 381 | hypothetical protein SORBIDRAFT_01g022290 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 15 | 307 | 11 | 302 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.99967e-42 | 15 | 289 | 7 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-24 | 23 | 310 | 41 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-23 | 15 | 301 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-23 | 15 | 301 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV024939 | 251 | 10 | 260 | 0 |
GD021882 | 227 | 95 | 321 | 0 |
GR994392 | 310 | 9 | 318 | 0 |
HO303328 | 227 | 88 | 314 | 0 |
DR793150 | 242 | 10 | 251 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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