Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00029223m |
Family | AA7 |
Protein Properties | Length: 526 Molecular Weight: 56927.1 Isoelectric Point: 9.0398 |
Chromosome | Chromosome/Scaffold: 005960 Start: 9996 End: 11573 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 72 | 518 | 0 |
ATVRPLYIVTPTNASHVQAAVACGRRSGVRLRVRSGGHDYEGLSYRAVRNETFAVLDLSSLRDVRVDPQASTAWVDSGATLGELYYAVGKASGRLGFPAG LCPTVGVGGHFSGGGFGMLLRKYGMAIDNVIDAVLVDARGRLLSKSTMGSDVFWAIRGGGGGSFGVVLSWQVRLVPVPATVTVFNLPVTAAQGAVDVVTR WQLVAPALPDDLIIRVVVQQQTANFQSLFLGTCDALLPVMSSRFPELGFNRSHCREMTWIQSVPYIYLGSGSTVEDLLNRTTSASVFASGYKATSDYVRR AIPRDAWATIFAKLAQPNAGLMILDPYGAAISAVPESATSYPHRAGVLYNIQYMNFWSMAAGDGAVQTKWIRDFYAFMAPYVSSSPREAYFNYRDLDLGE NVVVGNVSSYQAGMVWGHKYFKDNYKRLAMAKGEIDPDDYFRNEQSI |
Full Sequence |
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Protein Sequence Length: 526 Download |
MAMARSSLPP PAVLIIFACL FCCYASQASS SDGFLQCLSA SIPSQLVFTP SSPSFTPLLK 60 SSIRNPKFFT PATVRPLYIV TPTNASHVQA AVACGRRSGV RLRVRSGGHD YEGLSYRAVR 120 NETFAVLDLS SLRDVRVDPQ ASTAWVDSGA TLGELYYAVG KASGRLGFPA GLCPTVGVGG 180 HFSGGGFGML LRKYGMAIDN VIDAVLVDAR GRLLSKSTMG SDVFWAIRGG GGGSFGVVLS 240 WQVRLVPVPA TVTVFNLPVT AAQGAVDVVT RWQLVAPALP DDLIIRVVVQ QQTANFQSLF 300 LGTCDALLPV MSSRFPELGF NRSHCREMTW IQSVPYIYLG SGSTVEDLLN RTTSASVFAS 360 GYKATSDYVR RAIPRDAWAT IFAKLAQPNA GLMILDPYGA AISAVPESAT SYPHRAGVLY 420 NIQYMNFWSM AAGDGAVQTK WIRDFYAFMA PYVSSSPREA YFNYRDLDLG ENVVVGNVSS 480 YQAGMVWGHK YFKDNYKRLA MAKGEIDPDD YFRNEQSIPP LAQNK* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG0277 | GlcD | 3.0e-11 | 69 | 521 | 470 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
pfam01565 | FAD_binding_4 | 6.0e-16 | 76 | 214 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
pfam08031 | BBE | 4.0e-16 | 460 | 519 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD53702.1 | 0 | 1 | 525 | 1 | 523 | putative CPRD2 [Oryza sativa Japonica Group] |
GenBank | EAZ01292.1 | 0 | 1 | 525 | 1 | 523 | hypothetical protein OsI_23321 [Oryza sativa Indica Group] |
RefSeq | NP_001057833.1 | 0 | 1 | 525 | 6 | 528 | Os06g0549900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002438542.1 | 0 | 1 | 521 | 1 | 522 | hypothetical protein SORBIDRAFT_10g021690 [Sorghum bicolor] |
RefSeq | XP_002438543.1 | 0 | 1 | 525 | 1 | 529 | hypothetical protein SORBIDRAFT_10g021700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 24 | 521 | 5 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 24 | 521 | 5 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 24 | 524 | 1 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 24 | 524 | 1 | 499 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 24 | 524 | 1 | 499 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |