Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00029328m |
Family | CE8 |
Protein Properties | Length: 426 Molecular Weight: 44749 Isoelectric Point: 7.9963 |
Chromosome | Chromosome/Scaffold: 007942 Start: 563 End: 1840 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 97 | 392 | 0 |
LTVDRRGCANFTSLQEAVDAVPDRAAARTLIAVDAGVYAEKVVVRSAKTGVTVQGRGNLATTVAWNGTANSSGGTFASATFAVLADGFVAYNLSVQNTAR PADPGDAGGQAVALRVSGDQAAFYWCGFYGSQDTLLDERGRHLFRECYVEGSIDFIFGDARSLYLGCTISSVAAAGGGAGAVTGSVTAHGRASPADRTGF AFVRCSVVGTGQVWLGRPWGAYATVVFARTYLAGVVAPGGWNDWNDPARQRTVFFGEYDCTGPGASGGGAAQRVAYARQLDERQAAPFMDASYIDG |
Full Sequence |
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Protein Sequence Length: 426 Download |
MRLVGRRRTG STVRAAAKPL VVLWAASAIC SALVAVLLAS RSFYLQLQQQ QQQQQPDSDT 60 STGAAEEGRH HHRRRACDDH ARWVAKMASL HNASLVLTVD RRGCANFTSL QEAVDAVPDR 120 AAARTLIAVD AGVYAEKVVV RSAKTGVTVQ GRGNLATTVA WNGTANSSGG TFASATFAVL 180 ADGFVAYNLS VQNTARPADP GDAGGQAVAL RVSGDQAAFY WCGFYGSQDT LLDERGRHLF 240 RECYVEGSID FIFGDARSLY LGCTISSVAA AGGGAGAVTG SVTAHGRASP ADRTGFAFVR 300 CSVVGTGQVW LGRPWGAYAT VVFARTYLAG VVAPGGWNDW NDPARQRTVF FGEYDCTGPG 360 ASGGGAAQRV AYARQLDERQ AAPFMDASYI DGSQWVVPPL LPTEQGDDGI ISAEYGAKTM 420 AGSSM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-82 | 94 | 396 | 303 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-86 | 95 | 398 | 311 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-97 | 96 | 399 | 305 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-104 | 83 | 398 | 334 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-118 | 92 | 398 | 308 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30191.1 | 0 | 77 | 405 | 86 | 409 | unnamed protein product [Vitis vinifera] |
GenBank | EEC85099.1 | 0 | 70 | 406 | 160 | 500 | hypothetical protein OsI_32473 [Oryza sativa Indica Group] |
RefSeq | NP_001063991.1 | 0 | 70 | 406 | 62 | 402 | Os09g0571100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002264941.1 | 0 | 84 | 405 | 2 | 319 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002459865.1 | 0 | 76 | 415 | 80 | 420 | hypothetical protein SORBIDRAFT_02g012560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 99 | 396 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 5.60519e-45 | 103 | 406 | 15 | 318 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 0.000000000000005 | 107 | 402 | 18 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 0.000000000000005 | 107 | 402 | 18 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 0.000000000000005 | 107 | 402 | 18 | 342 | A Chain A, Pectin Methylesterase From Carrot |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |