| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00029452m |
| Family | CE8 |
| Protein Properties | Length: 175 Molecular Weight: 18900.3 Isoelectric Point: 9.2326 |
| Chromosome | Chromosome/Scaffold: 007359 Start: 12711 End: 13886 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 43 | 168 | 1.5e-37 |
| AAKSQGCTLHAVATGYGAIAASQRSSPAEDSGFSFVGCRLTGFGTLYLGRAWGRYARVVYSYCDLSGIVLPQGWSDWGDRSRTKTVLFGEYSCKGPGAST RQRVPWSRALTYEEARPFLGRSFING | |||
| Full Sequence |
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| Protein Sequence Length: 175 Download |
| MLKTLTDSVV TFFSHPCHKL SSPSGNDSDV PLLSSSSLAL NVAAKSQGCT LHAVATGYGA 60 IAASQRSSPA EDSGFSFVGC RLTGFGTLYL GRAWGRYARV VYSYCDLSGI VLPQGWSDWG 120 DRSRTKTVLF GEYSCKGPGA STRQRVPWSR ALTYEEARPF LGRSFINGEQ WLRL* 180 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 8.0e-45 | 48 | 172 | 127 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 6.0e-45 | 49 | 172 | 125 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 3.0e-53 | 41 | 173 | 133 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 3.0e-58 | 47 | 174 | 128 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 1.0e-59 | 44 | 174 | 133 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82420.1 | 0 | 17 | 174 | 248 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
| GenBank | EEE67559.1 | 0 | 17 | 174 | 247 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | XP_002298857.1 | 1.4013e-45 | 4 | 174 | 160 | 318 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002440102.1 | 1.4013e-45 | 41 | 174 | 273 | 406 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
| RefSeq | XP_002522727.1 | 0 | 4 | 174 | 225 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0.000000000000004 | 41 | 173 | 158 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0.00000000000001 | 41 | 173 | 162 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL819379 | 128 | 48 | 175 | 0 |
| EE163480 | 135 | 41 | 175 | 0 |
| BE493797 | 135 | 41 | 175 | 0 |
| CI247476 | 120 | 56 | 175 | 0 |
| CI141364 | 127 | 51 | 175 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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