| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00029492m |
| Family | GT9 |
| Protein Properties | Length: 476 Molecular Weight: 52222.6 Isoelectric Point: 6.6715 |
| Chromosome | Chromosome/Scaffold: 006834 Start: 8521 End: 10776 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT9 | 198 | 446 | 1.3e-22 |
| LKNRYYDLILSTRLAGIGHALFLFMSSARDKIGYVYPNVNSVGAGLFLTEMFKAPTTNLSDGGYHMYKEMLEWIGRPAKNVPQQPTPPLRVSISKKLRAY VEGKYDSAGVEKGKYVVVHGIASDSVASMKSRGDDDCLLPLEHWAQIAKEISSDKKGLKPLFVIPHEKHREEIEEEVGEDTNILFLTTPGQLTCLINDSA GVVATNTAAVQLANARDKPCVALFSSAEKARLFLPYMEDKGSCTVITSA | |||
| Full Sequence |
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| Protein Sequence Length: 476 Download |
| MQTPTMSTSM ATTPATTHAV APAPAKPPAP RPCCNHLLLL PSTSHRRGSV VARSAKKKNP 60 WLDPFDDGPD EEFDYQGMFA GGKQEEDPRP PEDPANPYGF LRFPQGYNPE LDSLASKVRG 120 DVRRACCVVS GGVYENVLFF PVVQMLKDRY PGVVVDVVTS ARGKQVYEMC KNVRYATVYD 180 PDDDWPEPAE YTHQLGILKN RYYDLILSTR LAGIGHALFL FMSSARDKIG YVYPNVNSVG 240 AGLFLTEMFK APTTNLSDGG YHMYKEMLEW IGRPAKNVPQ QPTPPLRVSI SKKLRAYVEG 300 KYDSAGVEKG KYVVVHGIAS DSVASMKSRG DDDCLLPLEH WAQIAKEISS DKKGLKPLFV 360 IPHEKHREEI EEEVGEDTNI LFLTTPGQLT CLINDSAGVV ATNTAAVQLA NARDKPCVAL 420 FSSAEKARLF LPYMEDKGSC TVITSATGKL IDIDVEAVKK AVKDFEPAPS FALAK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03789 | GT1_LPS_heptosyltransferase | 1.0e-5 | 137 | 231 | 95 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 1.0e-23 | 122 | 470 | 360 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC83246.1 | 0 | 6 | 475 | 1 | 461 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 6 | 475 | 1 | 425 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 475 | 1 | 468 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 1 | 475 | 1 | 465 | hypothetical protein LOC100275158 [Zea mays] |
| RefSeq | XP_002332075.1 | 0 | 10 | 466 | 1 | 459 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC878039 | 272 | 92 | 363 | 0 |
| EE170514 | 272 | 92 | 363 | 0 |
| EE046780 | 269 | 92 | 360 | 0 |
| EE026840 | 268 | 91 | 358 | 0 |
| DN149044 | 245 | 92 | 336 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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