y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00029778m |
Family | GH14 |
Protein Properties | Length: 578 Molecular Weight: 63653 Isoelectric Point: 5.0119 |
Chromosome | Chromosome/Scaffold: 007074 Start: 6963 End: 9493 |
Description | beta-amylase 6 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 78 | 498 | 0 |
YVMLPLEVVSTENELEDAEGLRARLRRLRGAGVDGVMVDVWWGIVEGAGPGRYEWRAYRELFRMVQAEGLKLQAIMSFHACGENVGDAVSIPIPRWVREV GEADPDVFYTSPSGVRNPEYLTIGVDDKPLFHGRTAIQLYADFMRSFRENMADFLDSGLIVDIEVGLGPAGELRYPSYAETQGWVFPGIGQFQCYDKYLA ADFKAAAAAAGHPEWDLPRDAGEVNDTPEDTGFFAAEGGTYLTEQGRFFLTWYSSRLIAHGDRVLEEANRAFMGCPVKLAAKVSGIHWWYRHPSHAAELA AGYYNLGGRDGYRPIARALARHDGAVLNFTCAEMRDSEQPAEALSSPERLVRQALSAGWREGAEVACENALSRYDRSGYNQMLLSARPNGAGAPPPRRRV AAVTYLRLSDELLAGNNFRIF |
Full Sequence |
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Protein Sequence Length: 578 Download |
MLRSSPASPV KPQQWTVRRS SAAASPPPVV AVARRTVASA PLRAMTTESA ETHPVPEPPP 60 LFADEEEETM LGSYVPVYVM LPLEVVSTEN ELEDAEGLRA RLRRLRGAGV DGVMVDVWWG 120 IVEGAGPGRY EWRAYRELFR MVQAEGLKLQ AIMSFHACGE NVGDAVSIPI PRWVREVGEA 180 DPDVFYTSPS GVRNPEYLTI GVDDKPLFHG RTAIQLYADF MRSFRENMAD FLDSGLIVDI 240 EVGLGPAGEL RYPSYAETQG WVFPGIGQFQ CYDKYLAADF KAAAAAAGHP EWDLPRDAGE 300 VNDTPEDTGF FAAEGGTYLT EQGRFFLTWY SSRLIAHGDR VLEEANRAFM GCPVKLAAKV 360 SGIHWWYRHP SHAAELAAGY YNLGGRDGYR PIARALARHD GAVLNFTCAE MRDSEQPAEA 420 LSSPERLVRQ ALSAGWREGA EVACENALSR YDRSGYNQML LSARPNGAGA PPPRRRVAAV 480 TYLRLSDELL AGNNFRIFKT FVRKMHAGMD YCPDPARYGR PMRPLERSAP EIPMERLLEA 540 TAPAPAFPFD AETDMSVGGG LAEAIDWVIG KIEWVFG* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 5.0e-107 | 63 | 456 | 396 | + beta-amylase | ||
PLN02905 | PLN02905 | 4.0e-134 | 58 | 506 | 453 | + beta-amylase | ||
PLN00197 | PLN00197 | 4.0e-137 | 43 | 510 | 471 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 1.0e-153 | 72 | 508 | 440 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 63 | 577 | 516 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28226.1 | 0 | 1 | 577 | 1 | 595 | unknown [Zea mays] |
EMBL | CAA76131.1 | 0 | 1 | 577 | 11 | 598 | beta-amylase [Triticum aestivum] |
GenBank | EEC82222.1 | 0 | 4 | 576 | 36 | 631 | hypothetical protein OsI_26370 [Oryza sativa Indica Group] |
RefSeq | NP_001059906.1 | 0 | 4 | 576 | 5 | 599 | Os07g0543100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460819.1 | 0 | 1 | 577 | 1 | 604 | hypothetical protein SORBIDRAFT_02g035590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 67 | 559 | 4 | 495 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 1q6c_A | 0 | 67 | 559 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 67 | 559 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1uko_D | 0 | 67 | 559 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1uko_C | 0 | 67 | 559 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777976 | 419 | 121 | 538 | 0 |
HO803971 | 387 | 153 | 538 | 0 |
FL764721 | 263 | 266 | 528 | 0 |
HO782669 | 370 | 170 | 538 | 0 |
FL752675 | 231 | 148 | 378 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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