y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00029779m |
Family | GH14 |
Protein Properties | Length: 489 Molecular Weight: 55396.7 Isoelectric Point: 4.812 |
Chromosome | Chromosome/Scaffold: 007074 Start: 1623 End: 4629 |
Description | beta-amylase 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 13 | 432 | 0 |
YVMLPLDVITVDNTFEKADETRVQLQKLVEAGADGVMIDVWWGLVEGKAPGVYDWSAYKQVFKLVQEAGLKLQAIMSCHQCGGNVGDIVNIPIPQWVRDV GEANPDIFYTNRRKMRNIEYLTIGVDDQPLFQGRTAIQLYADYMKSFRENMAEFLDAGVIVDIEVGLGPAGEMRYPSYPQSQGWVYPGVGEFICYDKYLE ADFKAAATKAGHPEWELPDDAGEYNDTPEKTQFFADNGTYQTEKGKFFLTWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTA GYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDNEQSSEAKSAPEELVQQVLSAGWREGLNIACENALSRYDATAYNTILRNARPQGINKNGPPEHKLY GFTYLRVSNELLEGQNYATF |
Full Sequence |
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Protein Sequence Length: 489 Download |
MAGNLLSNYV QVYVMLPLDV ITVDNTFEKA DETRVQLQKL VEAGADGVMI DVWWGLVEGK 60 APGVYDWSAY KQVFKLVQEA GLKLQAIMSC HQCGGNVGDI VNIPIPQWVR DVGEANPDIF 120 YTNRRKMRNI EYLTIGVDDQ PLFQGRTAIQ LYADYMKSFR ENMAEFLDAG VIVDIEVGLG 180 PAGEMRYPSY PQSQGWVYPG VGEFICYDKY LEADFKAAAT KAGHPEWELP DDAGEYNDTP 240 EKTQFFADNG TYQTEKGKFF LTWYSNKLIK HGDKILDEAN KVFLGCRVQL AIKISGIHWW 300 YRVPNHAAEL TAGYYNLDDR DGYRTIAHML TRHRASMNFT CAEMRDNEQS SEAKSAPEEL 360 VQQVLSAGWR EGLNIACENA LSRYDATAYN TILRNARPQG INKNGPPEHK LYGFTYLRVS 420 NELLEGQNYA TFKTFVRRMH ANLDYNANID PLAPMERSKP EIPIEQILEV AQPKLEPFPF 480 IENTDLPV* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 9.0e-127 | 7 | 440 | 438 | + beta-amylase | ||
PLN00197 | PLN00197 | 7.0e-159 | 10 | 439 | 434 | + beta-amylase; Provisional | ||
PLN02905 | PLN02905 | 2.0e-162 | 9 | 440 | 436 | + beta-amylase | ||
PLN02803 | PLN02803 | 7.0e-177 | 10 | 439 | 433 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 4 | 488 | 489 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD15902.1 | 0 | 1 | 488 | 1 | 488 | beta-amylase [Zea mays] |
DDBJ | BAC83773.1 | 0 | 1 | 488 | 1 | 488 | putative beta-amylase [Oryza sativa Japonica Group] |
DDBJ | BAH93971.1 | 0 | 1 | 488 | 942 | 1429 | Os07g0543200 [Oryza sativa Japonica Group] |
RefSeq | NP_001059907.1 | 0 | 1 | 488 | 533 | 1020 | Os07g0543300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001105496.1 | 0 | 1 | 488 | 1 | 488 | beta amylase5 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2xgi_A | 0 | 1 | 488 | 1 | 488 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 2xgb_A | 0 | 1 | 488 | 1 | 488 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 2xg9_A | 0 | 1 | 488 | 1 | 488 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 2xfy_A | 0 | 1 | 488 | 1 | 488 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 2xfr_A | 0 | 1 | 488 | 1 | 488 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777976 | 470 | 26 | 488 | 0 |
HO803971 | 393 | 88 | 473 | 0 |
DV507828 | 283 | 32 | 314 | 0 |
FL844663 | 262 | 228 | 489 | 0 |
DY266204 | 323 | 158 | 480 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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