| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00029795m |
| Family | GH5 |
| Protein Properties | Length: 561 Molecular Weight: 61257.1 Isoelectric Point: 6.4991 |
| Chromosome | Chromosome/Scaffold: 006774 Start: 762 End: 4977 |
| Description | Cellulase (glycosyl hydrolase family 5) protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH5 | 42 | 353 | 2.3e-39 |
| VGADGRRVKLACANWASHLEPAAAEGLARRGVGDIAARVAGMGFNCVRLTWPTHLATNGTLASLPFRWSLERLDMRESVAGVRVNNPALLDLPLIDVFRE VISALASKGIMVILDNQMTTPGWCCSRTDGNGFFGDKYFDPNEWLKGLSAMATMFNDTKNVVGMSLRNELRGPNQNVSLWYRYMALGAEAVHAANPNVLV ILSGLDFDNTLSFLHSKKAELQFTGKLVYEQHWYGFSDGGNWEIRNQNDACGMVVDSIWAKGLFLLEQGWPLFFSEFGFDMSGTHIGDNRYLTCFLSVAA EMDLDWAIWALQ | |||
| Full Sequence |
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| Protein Sequence Length: 561 Download |
| MAASTSPTPL LLAVLFILLL PALLAAATLP PLPLSTASRW VVGADGRRVK LACANWASHL 60 EPAAAEGLAR RGVGDIAARV AGMGFNCVRL TWPTHLATNG TLASLPFRWS LERLDMRESV 120 AGVRVNNPAL LDLPLIDVFR EVISALASKG IMVILDNQMT TPGWCCSRTD GNGFFGDKYF 180 DPNEWLKGLS AMATMFNDTK NVVGMSLRNE LRGPNQNVSL WYRYMALGAE AVHAANPNVL 240 VILSGLDFDN TLSFLHSKKA ELQFTGKLVY EQHWYGFSDG GNWEIRNQND ACGMVVDSIW 300 AKGLFLLEQG WPLFFSEFGF DMSGTHIGDN RYLTCFLSVA AEMDLDWAIW ALQGSYYIRE 360 GILAYDESYG LLSWDWCTAR NPSFIKRINS LQTPFQGPGL PNSREPYNVI FHPQTGLCVL 420 AKASKSVKLG PCDESNAWNY TSAYELVVKS TGQCLQATSV GENAKLGTDC SKPSSKWQLI 480 SNSRMHVSAE LTKNGTRVCL DAGLDGAIIT NQCKCLSLDP TCNPESQWFK IILSSRDTPG 540 GSSILQLPSV GPWPPTSLSS * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 0.0002 | 407 | 513 | 121 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00150 | Cellulase | 2.0e-12 | 75 | 352 | 285 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAD41089.2 | 0 | 35 | 559 | 30 | 550 | OSJNBb0011N17.6 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAH67676.1 | 0 | 35 | 559 | 33 | 553 | H0510A06.1 [Oryza sativa (indica cultivar-group)] |
| GenBank | EAY94563.1 | 0 | 35 | 559 | 30 | 552 | hypothetical protein OsI_16341 [Oryza sativa Indica Group] |
| RefSeq | NP_001132121.1 | 0 | 36 | 560 | 31 | 555 | hypothetical protein LOC100193538 [Zea mays] |
| RefSeq | XP_002446674.1 | 0 | 35 | 560 | 31 | 556 | hypothetical protein SORBIDRAFT_06g020260 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.0000005 | 36 | 366 | 8 | 335 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.0000005 | 36 | 366 | 8 | 335 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.000002 | 36 | 278 | 8 | 243 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.000002 | 36 | 278 | 8 | 243 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 4dm1_C | 0.001 | 41 | 210 | 20 | 168 | A Chain A, Contribution Of Disulfide Bond Toward Thermostability In Hyperthermostable Endocellulase |
