| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00029831m |
| Family | CBM43 |
| Protein Properties | Length: 470 Molecular Weight: 49252.9 Isoelectric Point: 6.7699 |
| Chromosome | Chromosome/Scaffold: 007622 Start: 9351 End: 13607 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 385 | 466 | 1.2e-33 |
| WCVAKAGADATTLQNNINYACGFVDCKPIQSGGGCFDPNNVQSHASFVMNTYYQANGRHDSDCDFKGTGMVISKDPSYGGCK | |||
| GH17 | 28 | 350 | 0 |
| IGVNYGANADNLPSPAAVATFLATKTTVNRVKLFDANPAFLDAFAANAPAISIAVSIPNSALPAFADRAAGLDAARGWVRDNLAAHVAAGANVTLLLAGN EILGPTVVPDLVVALLPAMRRLHQALQLEGLPQVRVTTPHYLGILAPSDGIPSNARFRPGLDAKVLAPMLRFHNDTGSPLMVNAYPYFSYNAQNLNYAVF RPNAGVYDPATKLNYTSMFDAQMDAIYTAMKKLGFGDVQIAVGEAGWPTQAEPGQVGVGPEEARDFNAGMIRVCSGGKGTPLMPGRTFETYIFSLFDENQ KPGPIAERNFGIFNPDFTPKYDL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 470 Download |
| MLPLLLFLLA AAAASGPAAA QGLPPLPIGV NYGANADNLP SPAAVATFLA TKTTVNRVKL 60 FDANPAFLDA FAANAPAISI AVSIPNSALP AFADRAAGLD AARGWVRDNL AAHVAAGANV 120 TLLLAGNEIL GPTVVPDLVV ALLPAMRRLH QALQLEGLPQ VRVTTPHYLG ILAPSDGIPS 180 NARFRPGLDA KVLAPMLRFH NDTGSPLMVN AYPYFSYNAQ NLNYAVFRPN AGVYDPATKL 240 NYTSMFDAQM DAIYTAMKKL GFGDVQIAVG EAGWPTQAEP GQVGVGPEEA RDFNAGMIRV 300 CSGGKGTPLM PGRTFETYIF SLFDENQKPG PIAERNFGIF NPDFTPKYDL GLLRDGSSAS 360 ASPNPSPNPS PKPSPNPSPS GGGKWCVAKA GADATTLQNN INYACGFVDC KPIQSGGGCF 420 DPNNVQSHAS FVMNTYYQAN GRHDSDCDFK GTGMVISKDP SYGGCKYVS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-24 | 385 | 454 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-41 | 385 | 467 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-58 | 28 | 350 | 328 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX95270.1 | 0 | 23 | 469 | 31 | 472 | glucan endo-1,3-beta-glucosidase precursor (ec 3.2.1.39) ((1-3)-beta-glucan endohydrolase) ((1-3)-beta-glucanase) (beta-1,3-endoglucanase) [Oryza sativa Japonica Group] |
| GenBank | ACF79258.1 | 0 | 16 | 467 | 13 | 457 | unknown [Zea mays] |
| GenBank | ACG36515.1 | 0 | 19 | 467 | 18 | 458 | glucan endo-1,3-beta-glucosidase precursor [Zea mays] |
| RefSeq | NP_001141385.1 | 0 | 16 | 467 | 13 | 457 | hypothetical protein LOC100273476 [Zea mays] |
| RefSeq | XP_002451320.1 | 0 | 12 | 469 | 18 | 467 | hypothetical protein SORBIDRAFT_05g027690 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 27 | 352 | 2 | 314 | A Chain A, Crystal Structure Of The C-Terminal Globular Domain Of Oligosaccharyltransferase (Af_0329) From Archaeoglobus Fulgidus |
| PDB | 3ur8_A | 0 | 27 | 352 | 2 | 314 | A Chain A, Crystal Structure Of The C-Terminal Globular Domain Of Oligosaccharyltransferase (Af_0329) From Archaeoglobus Fulgidus |
| PDB | 3ur7_B | 0 | 27 | 352 | 2 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 27 | 352 | 2 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 1ghs_B | 0 | 28 | 350 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
