y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00029885m |
Family | GH28 |
Protein Properties | Length: 461 Molecular Weight: 47632.6 Isoelectric Point: 6.7362 |
Chromosome | Chromosome/Scaffold: 006284 Start: 3425 End: 5640 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 95 | 423 | 0 |
WSAACAAGGASTVLVPASYVFLVGPITFTGDSCEPNMAFQVDGTILAHTGSPAWRSGVLTQWLEFKNVRGITIQGCGTVDGQGSHWWSGGDSAVAAEMEL DSDRAGTSNRPTAVRVFQGANVAVSGITIRNSPRFHLTFDTCRDVEVRDVTVSSPGDSPNTDGIHLAGSVGVSIHHSTIACGDDCISIQDGCSDVFIRGV HCGPGHGISIGGLGKGGASAAVSGVTVQDVTLNQTMTGVRIKTWQGGSGSVRDVQFSGVRVSAVKTPVVIDQYYCDHTTCSNRTSAVAVAGVVFQGVAGT YTERPVYLACSDAAPCSGIHLANIQLAPV |
Full Sequence |
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Protein Sequence Length: 461 Download |
MKRRSIPNAS CANATFHLAL LLLVTASPSF LQHCLARRES HHRPPPSGRS HHPPLPAPVM 60 PPPPPPQSAA TFSVLEYGAV GDGATDDTKA FADAWSAACA AGGASTVLVP ASYVFLVGPI 120 TFTGDSCEPN MAFQVDGTIL AHTGSPAWRS GVLTQWLEFK NVRGITIQGC GTVDGQGSHW 180 WSGGDSAVAA EMELDSDRAG TSNRPTAVRV FQGANVAVSG ITIRNSPRFH LTFDTCRDVE 240 VRDVTVSSPG DSPNTDGIHL AGSVGVSIHH STIACGDDCI SIQDGCSDVF IRGVHCGPGH 300 GISIGGLGKG GASAAVSGVT VQDVTLNQTM TGVRIKTWQG GSGSVRDVQF SGVRVSAVKT 360 PVVIDQYYCD HTTCSNRTSA VAVAGVVFQG VAGTYTERPV YLACSDAAPC SGIHLANIQL 420 APVKCGGGGN HLDGPFCWKA YGDQVKPVEP PVGCLLAEAP * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-53 | 68 | 429 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 8.0e-54 | 72 | 420 | 352 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-57 | 67 | 420 | 357 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-60 | 105 | 420 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-74 | 67 | 451 | 391 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 13 | 460 | 5 | 430 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 13 | 460 | 5 | 430 | unknown [Glycine max] |
GenBank | EAZ00960.1 | 0 | 1 | 460 | 2 | 432 | hypothetical protein OsI_22993 [Oryza sativa Indica Group] |
GenBank | EAZ37024.1 | 0 | 1 | 460 | 2 | 429 | hypothetical protein OsJ_21369 [Oryza sativa Japonica Group] |
RefSeq | XP_002266600.1 | 0 | 53 | 460 | 67 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-23 | 167 | 368 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-23 | 165 | 424 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-23 | 165 | 424 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-23 | 165 | 424 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-23 | 165 | 424 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |