Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030159m |
Family | AA1 |
Protein Properties | Length: 547 Molecular Weight: 60269.3 Isoelectric Point: 9.5543 |
Chromosome | Chromosome/Scaffold: 006366 Start: 1252 End: 7170 |
Description | SKU5 similar 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 48 | 501 | 0 |
VKQQGILINNQFPGPQIEAVTNDNLIINVFNKLNEPFLLSWSGLQQRRNSFEDGVAGTTCPIPPGANFTYIMQAKDQIGTYYYFPSLAFHKAAGGFGGIR VLSRPQIPVPFPPPAADYTALIGDWYRANHTDLRYVLDSGKALGFPDGLLINGRGPNGYTFTVQPGKTYRFRITNVGLATSLNIRFQGHTMKLVEVEGSH TMQTTYSSLDVHLGQSYSVLLTADQPAFDYAIVVSTRFTTRILSTTAVLHYANSAGKAPGPLPGGPTIQIDWSLNQARSIRWNLTASGPRPNPQGSYHYG LVPVTRTIRLANSAPTINGKQRYAVNSVSYVSPDTPLKVADYYKIGGVFSVGTIADNPSYGGAYLQTSVMGASYRDYVEIVFENSEDVVQSWHIDGYAFW VVGMDGGKWSAASRQGYNLRDGVSRYTVQVYPRSWTAIYMPLDNVGMWNVRSES |
Full Sequence |
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Protein Sequence Length: 547 Download |
MAGGNGAAAR LLLYFAGLLI VPLLVAGDDP YRFFTWTVTY GDIYPLGVKQ QGILINNQFP 60 GPQIEAVTND NLIINVFNKL NEPFLLSWSG LQQRRNSFED GVAGTTCPIP PGANFTYIMQ 120 AKDQIGTYYY FPSLAFHKAA GGFGGIRVLS RPQIPVPFPP PAADYTALIG DWYRANHTDL 180 RYVLDSGKAL GFPDGLLING RGPNGYTFTV QPGKTYRFRI TNVGLATSLN IRFQGHTMKL 240 VEVEGSHTMQ TTYSSLDVHL GQSYSVLLTA DQPAFDYAIV VSTRFTTRIL STTAVLHYAN 300 SAGKAPGPLP GGPTIQIDWS LNQARSIRWN LTASGPRPNP QGSYHYGLVP VTRTIRLANS 360 APTINGKQRY AVNSVSYVSP DTPLKVADYY KIGGVFSVGT IADNPSYGGA YLQTSVMGAS 420 YRDYVEIVFE NSEDVVQSWH IDGYAFWVVG MDGGKWSAAS RQGYNLRDGV SRYTVQVYPR 480 SWTAIYMPLD NVGMWNVRSE SWARQYLGQQ FYLRVWTPST SLRDEFPIPK NALLCGRAAG 540 RRTRPL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02991 | PLN02991 | 0 | 17 | 546 | 531 | + oxidoreductase | ||
PLN02835 | PLN02835 | 0 | 18 | 543 | 526 | + oxidoreductase | ||
PLN02354 | PLN02354 | 0 | 21 | 540 | 528 | + copper ion binding / oxidoreductase | ||
PLN02792 | PLN02792 | 0 | 24 | 543 | 523 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 15 | 537 | 539 | + copper ion binding / pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53812.1 | 0 | 28 | 546 | 30 | 550 | unknown [Zea mays] |
GenBank | EEC82126.1 | 0 | 1 | 546 | 1 | 546 | hypothetical protein OsI_26158 [Oryza sativa Indica Group] |
GenBank | EEE67250.1 | 0 | 1 | 546 | 1 | 546 | hypothetical protein OsJ_24405 [Oryza sativa Japonica Group] |
RefSeq | NP_001152000.1 | 0 | 28 | 546 | 30 | 550 | L-ascorbate oxidase [Zea mays] |
RefSeq | XP_002460757.1 | 0 | 26 | 546 | 28 | 548 | hypothetical protein SORBIDRAFT_02g034420 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 32 | 539 | 4 | 542 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 1asq_A | 0 | 32 | 539 | 4 | 542 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 1asp_B | 0 | 32 | 539 | 4 | 542 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 1asp_A | 0 | 32 | 539 | 4 | 542 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 1aso_B | 0 | 32 | 539 | 4 | 542 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |