Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030167m |
Family | GT14 |
Protein Properties | Length: 411 Molecular Weight: 46214.4 Isoelectric Point: 6.785 |
Chromosome | Chromosome/Scaffold: 007370 Start: 8030 End: 12606 |
Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT14 | 64 | 318 | 0 |
FAYWISGTGGDARRVLRLLRAVYHPRNRYLLHLDAGAAAGEREALAQAVRWDEPAWREFRNVDVVGEGYAVDRTGSSALAAVLHGAAVLLRIGAHWDWLV TLSAEDYPLVTQDDLLYAFSSVPRDLNFIDHTSELGWKRHERFEKIIVDPSLYMDRNTEPFPSKEIRQIPDAFQIFTGSPWVILSRNFAEHCVHGWDNLP RKLLMYFANTAYSMESYFQTLICNSSDFRNTTVNGDLRYFVWDDPPGLDPLVLNE |
Full Sequence |
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Protein Sequence Length: 411 Download |
MRPRRLPPCL AVTAVSAALL FVLLLLCASS SPPLFAWRSS AASRPAPPPP PPRAEWGPGR 60 PPSFAYWISG TGGDARRVLR LLRAVYHPRN RYLLHLDAGA AAGEREALAQ AVRWDEPAWR 120 EFRNVDVVGE GYAVDRTGSS ALAAVLHGAA VLLRIGAHWD WLVTLSAEDY PLVTQDDLLY 180 AFSSVPRDLN FIDHTSELGW KRHERFEKII VDPSLYMDRN TEPFPSKEIR QIPDAFQIFT 240 GSPWVILSRN FAEHCVHGWD NLPRKLLMYF ANTAYSMESY FQTLICNSSD FRNTTVNGDL 300 RYFVWDDPPG LDPLVLNESH FENMLNSSSA FARRFEEDTP MLKKMDDELL NRSPVQLVPG 360 VWCLNLGKEQ NGTDADSCSK WGDINTVRPG RGGERLRQFI SEISQARGCR * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02485 | Branch | 2.0e-44 | 64 | 325 | 267 | + Core-2/I-Branching enzyme. This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. | ||
PLN03183 | PLN03183 | 1.0e-98 | 64 | 403 | 340 | + acetylglucosaminyltransferase family protein; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0008375 | acetylglucosaminyltransferase activity |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR16364.1 | 0 | 57 | 410 | 68 | 421 | unknown [Picea sitchensis] |
DDBJ | BAF14321.2 | 0 | 61 | 409 | 60 | 400 | Os04g0301700 [Oryza sativa Japonica Group] |
EMBL | CAE04680.2 | 0 | 61 | 409 | 60 | 423 | OSJNBb0018A10.9 [Oryza sativa (japonica cultivar-group)] |
EMBL | CAH66076.1 | 0 | 61 | 409 | 60 | 400 | H0215E01.4 [Oryza sativa (indica cultivar-group)] |
RefSeq | NP_001052407.1 | 0 | 61 | 409 | 60 | 400 | Os04g0301700 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3otk_D | 0.00000003 | 80 | 285 | 101 | 289 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_C | 0.00000003 | 80 | 285 | 101 | 289 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_B | 0.00000003 | 80 | 285 | 101 | 289 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_A | 0.00000003 | 80 | 285 | 101 | 289 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 2gam_D | 0.00000008 | 80 | 285 | 101 | 289 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |