y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00030206m |
Family | GH14 |
Protein Properties | Length: 546 Molecular Weight: 59496.4 Isoelectric Point: 8.8218 |
Chromosome | Chromosome/Scaffold: 007907 Start: 10430 End: 14099 |
Description | chloroplast beta-amylase |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH14 | 84 | 503 | 0 |
YVTLPADAVGPGGRVARRRAMGASLAALAAAGVAGVAFELWWGVVERQGPGEYDWAGYLDLAAMARRHGLRVRAILAFHQCGAGPHDPLWIPLPKWVLEE MDKVPDLSYTNRYQQRNKEYISLGCDSLPVLKGRSPMQAYSDFMRSFRNTFEDYLGAIVTEVQVGMGPGGELRYPSCPTEKLNQPGSTSKLGEFQCYDKF MQASLSAHAQILGIQEWGSGGSIGIDGSQHNLEESSFFRADGGYWDTPYGHFFLEWYSGMLVLHGERLCMIADTIFSGTGVTISGKVAGMHWHYYTCAHP SELTAGYYNTLLRDGYLPIAQMFAKYKAALCCGCFDLRDAEKTNPESSPEGTLRQLIGAAKMCNLPLNGENSVTRLDDASLNQVIRSSRLYSGRSSGTSF SFNYVRMNKSLFEFHNWSRF |
Full Sequence |
---|
Protein Sequence Length: 546 Download |
MAAITAPPPP PPASTSCRLP RRGGPLTRIA AASSSPSSRF RPSSTRRPSS STSFSAAGSS 60 GGGGEILHVS PPSPPANPPG APVYVTLPAD AVGPGGRVAR RRAMGASLAA LAAAGVAGVA 120 FELWWGVVER QGPGEYDWAG YLDLAAMARR HGLRVRAILA FHQCGAGPHD PLWIPLPKWV 180 LEEMDKVPDL SYTNRYQQRN KEYISLGCDS LPVLKGRSPM QAYSDFMRSF RNTFEDYLGA 240 IVTEVQVGMG PGGELRYPSC PTEKLNQPGS TSKLGEFQCY DKFMQASLSA HAQILGIQEW 300 GSGGSIGIDG SQHNLEESSF FRADGGYWDT PYGHFFLEWY SGMLVLHGER LCMIADTIFS 360 GTGVTISGKV AGMHWHYYTC AHPSELTAGY YNTLLRDGYL PIAQMFAKYK AALCCGCFDL 420 RDAEKTNPES SPEGTLRQLI GAAKMCNLPL NGENSVTRLD DASLNQVIRS SRLYSGRSSG 480 TSFSFNYVRM NKSLFEFHNW SRFTKFVRQM SDARTFLARL DVRRGQQYLS SMSVVWVVSR 540 ACAYT* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02161 | PLN02161 | 9.0e-87 | 122 | 511 | 401 | + beta-amylase | ||
PLN02905 | PLN02905 | 9.0e-89 | 124 | 510 | 393 | + beta-amylase | ||
PLN02801 | PLN02801 | 3.0e-107 | 122 | 510 | 396 | + beta-amylase | ||
PLN00197 | PLN00197 | 2.0e-144 | 83 | 514 | 437 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 5.0e-161 | 65 | 512 | 453 | + beta-amylase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD81275.1 | 0 | 83 | 543 | 106 | 566 | putative beta-amylase PCT-BMYI [Oryza sativa Japonica Group] |
DDBJ | BAH90978.1 | 0 | 83 | 532 | 106 | 555 | Os01g0236800 [Oryza sativa Japonica Group] |
RefSeq | NP_001130896.1 | 0 | 14 | 545 | 14 | 539 | hypothetical protein LOC100192000 [Zea mays] |
RefSeq | NP_001132696.1 | 0 | 1 | 545 | 1 | 537 | hypothetical protein LOC100194176 [Zea mays] |
RefSeq | XP_002454872.1 | 0 | 104 | 545 | 1 | 442 | hypothetical protein SORBIDRAFT_03g000480 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1b1y_A | 0 | 83 | 510 | 8 | 435 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 2xgi_A | 0 | 83 | 510 | 12 | 439 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 2xgb_A | 0 | 83 | 510 | 12 | 439 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 2xg9_A | 0 | 83 | 510 | 12 | 439 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
PDB | 2xfy_A | 0 | 83 | 510 | 12 | 439 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FL772856 | 257 | 177 | 433 | 0 |
FL861991 | 247 | 121 | 367 | 0 |
FL775529 | 254 | 177 | 430 | 0 |
FL977902 | 267 | 162 | 399 | 0 |
GR334835 | 247 | 122 | 368 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|