Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030219m |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 51935.4 Isoelectric Point: 6.4981 |
Chromosome | Chromosome/Scaffold: 007425 Start: 1537 End: 5140 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 415 | 0 |
ANKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAVILGSPDSSDWPVIDALPSYGRGRELPGKRHQSLIFGSNLTDVIITGANSTIDGQGAIWWDWFHNH TLNYTRPPLVELMYSTRVVISNLTFINSPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAHPSS NISIRNITGQTRNSAGIAFGSEMSGGISDVRAEGIRIVNSVHGIRIKTAPGRGGYVKNVYVADVNLDNVSIAIRITGNYGEHPDENYNRNALPTISNITI KNIVGVNIGVAGMLQGISGDNFSNICLSNVSLSVRSTNPWNC |
Full Sequence |
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Protein Sequence Length: 481 Download |
MSRSASTFQV LLVLATTVAQ TQWASVSGMY CNDLTPNVER PHSASITDFG AVGDGTTLNT 60 KAFQNALFYL NSFANKGGAQ LFVPAGRWLT GSFSLISHLT LSLDKDAVIL GSPDSSDWPV 120 IDALPSYGRG RELPGKRHQS LIFGSNLTDV IITGANSTID GQGAIWWDWF HNHTLNYTRP 180 PLVELMYSTR VVISNLTFIN SPFWNIHPVY CSQVLVQHLT ILAPISSPNT DGIDPDSSTN 240 VCIEDCYIRN GDDIVVIKSG WDEYGISFAH PSSNISIRNI TGQTRNSAGI AFGSEMSGGI 300 SDVRAEGIRI VNSVHGIRIK TAPGRGGYVK NVYVADVNLD NVSIAIRITG NYGEHPDENY 360 NRNALPTISN ITIKNIVGVN IGVAGMLQGI SGDNFSNICL SNVSLSVRST NPWNCSLVEG 420 YSNSVSPEIC EQLRTGPGPG QVCYDGNSYP AAAAQPQSPQ KSSACRLVNP FFCIRWFLCR 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-23 | 37 | 380 | 360 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-25 | 40 | 378 | 353 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-28 | 46 | 380 | 347 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-32 | 142 | 416 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-53 | 44 | 356 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR35653.1 | 0 | 1 | 480 | 8 | 490 | unknown [Zea mays] |
GenBank | EEC81792.1 | 0 | 1 | 472 | 30 | 499 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
GenBank | EEE66877.1 | 0 | 1 | 472 | 30 | 499 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
RefSeq | NP_001059282.1 | 0 | 1 | 472 | 2 | 439 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459610.1 | 0 | 20 | 480 | 36 | 499 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.99967e-42 | 42 | 402 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.99967e-42 | 42 | 402 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.99967e-42 | 42 | 402 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.99967e-42 | 42 | 402 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-18 | 88 | 410 | 52 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |