| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00030375m |
| Family | CBM49 |
| Protein Properties | Length: 630 Molecular Weight: 67291.4 Isoelectric Point: 8.2997 |
| Chromosome | Chromosome/Scaffold: 007299 Start: 836 End: 3646 |
| Description | glycosyl hydrolase 9C2 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM49 | 537 | 614 | 2.1e-37 |
| IEIEQKATASWTERGKTYHRYAVTVTNRSPKTVHELHIGISKLSGKVWGVDKARYGYVLPSWLPSLPAGKSAAFVYIQ | |||
| GH9 | 44 | 509 | 0 |
| DYGEALSKSILYFEAQRSGRLPGGQRVGWRADSGLLDGKANGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSVVEYGEQMAAAGELGHALEALRWGTDYF VKAHPEANVLYGEVGDGDSDHGCWQRPEDMTTSRQAYRLDPQHPGSELAGETAAAMAAASLVFRSSDPGYANQLLQHSKQLFEFADKYRGRYDSSITVAR KYYASSSGYGDELLWAAVWLYKASGDGQYLDYLANNADALGGTGWSINEFGWDVKYPGVQVLAAMLLLRGKAGGAHADVLRRYKQKADLFACSCLGRAGA TNVRRTPGGMIYLQSWNNVQFVTSASFLLAAYGDHLAAARQAAQCPSGAAAAQPAELLAFARSQVDYILGSNPRATSYMVGYGATFPQQAHHRGASIVSV KADPSFVSCQGGFNSWYHRRGSNPNLLVGATVGGPDEYDNFADERDNYEQTEATTYNNAPLMGVLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 630 Download |
| MARGRGGGGS RGAAGRMAVV PGRLALFVLA AAAQVACAAA AGHDYGEALS KSILYFEAQR 60 SGRLPGGQRV GWRADSGLLD GKANGVDLVG GYYDAGDNVK FGLPMAFTVT MMSWSVVEYG 120 EQMAAAGELG HALEALRWGT DYFVKAHPEA NVLYGEVGDG DSDHGCWQRP EDMTTSRQAY 180 RLDPQHPGSE LAGETAAAMA AASLVFRSSD PGYANQLLQH SKQLFEFADK YRGRYDSSIT 240 VARKYYASSS GYGDELLWAA VWLYKASGDG QYLDYLANNA DALGGTGWSI NEFGWDVKYP 300 GVQVLAAMLL LRGKAGGAHA DVLRRYKQKA DLFACSCLGR AGATNVRRTP GGMIYLQSWN 360 NVQFVTSASF LLAAYGDHLA AARQAAQCPS GAAAAQPAEL LAFARSQVDY ILGSNPRATS 420 YMVGYGATFP QQAHHRGASI VSVKADPSFV SCQGGFNSWY HRRGSNPNLL VGATVGGPDE 480 YDNFADERDN YEQTEATTYN NAPLMGVLAR LHGGGRRFGR SSSLADAAAA AEDASPIEIE 540 QKATASWTER GKTYHRYAVT VTNRSPKTVH ELHIGISKLS GKVWGVDKAR YGYVLPSWLP 600 SLPAGKSAAF VYIQAAPPAH VWVTGYKIL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02171 | PLN02171 | 0 | 42 | 629 | 606 | + endoglucanase | ||
| PLN02340 | PLN02340 | 0 | 42 | 627 | 591 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 42 | 511 | 471 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 44 | 511 | 468 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 44 | 509 | 468 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN25631.1 | 0 | 38 | 629 | 22 | 623 | unknown [Zea mays] |
| GenBank | EAY73052.1 | 0 | 1 | 629 | 1 | 640 | hypothetical protein OsI_00928 [Oryza sativa Indica Group] |
| RefSeq | NP_001042423.1 | 0 | 1 | 629 | 1 | 640 | Os01g0220100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002440792.1 | 0 | 24 | 629 | 6 | 627 | hypothetical protein SORBIDRAFT_09g006670 [Sorghum bicolor] |
| RefSeq | XP_002454930.1 | 0 | 37 | 629 | 38 | 654 | hypothetical protein SORBIDRAFT_03g001560 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 43 | 511 | 3 | 428 | A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In Complex With Fpt-Ii And Tipifarnib |
| PDB | 1ksc_A | 0 | 43 | 511 | 3 | 428 | A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In Complex With Fpt-Ii And Tipifarnib |
| PDB | 1ks8_A | 0 | 43 | 511 | 3 | 428 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 39 | 512 | 20 | 460 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 44 | 565 | 5 | 487 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
