| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00030577m |
| Family | GT5 |
| Protein Properties | Length: 348 Molecular Weight: 38864.8 Isoelectric Point: 6.0834 |
| Chromosome | Chromosome/Scaffold: 008016 Start: 60 End: 2988 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 28 | 340 | 0 |
| TSGRGPIDDFNYLDLPGHYMDQFKLYDPFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTPDGGWGLHSIIGENDWKFQGIVNGVDTTDWNPRHDVHLQS DGYTNYSLETVQTGKTQCKEALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVQ LAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTIPVVHAVGGLRDTVQHYNPYEEVGVGWTFEKAEANRMIDALGHCLNTYRNYRSSWEGIQRRGMMQDL SWDNAAKLYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 348 Download |
| MEPLRLPRKV STSTSAARAA SSASSASTSG RGPIDDFNYL DLPGHYMDQF KLYDPFGGDH 60 LNIFAAGIKA ADRLLTVSHG YAWELKTPDG GWGLHSIIGE NDWKFQGIVN GVDTTDWNPR 120 HDVHLQSDGY TNYSLETVQT GKTQCKEALQ KELGLPVRGD VPVIAFIGRL DHQKGVDLIA 180 EAMPWIAGQD VQLIMLGTGR QDLEDTLRRL ESQHYDRVRG WVGFSVQLAH RMTAGADILL 240 MPSRFEPCGL NQLYAMMYGT IPVVHAVGGL RDTVQHYNPY EEVGVGWTFE KAEANRMIDA 300 LGHCLNTYRN YRSSWEGIQR RGMMQDLSWD NAAKLYEEVL VAAKYQW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-62 | 66 | 344 | 285 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-93 | 42 | 345 | 310 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 2.0e-114 | 30 | 340 | 317 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-132 | 30 | 340 | 311 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 8.0e-139 | 30 | 343 | 314 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABY27640.1 | 0 | 17 | 347 | 435 | 765 | starch synthase IIc precursor [Sorghum bicolor] |
| GenBank | ACF87565.1 | 0 | 17 | 347 | 4 | 334 | unknown [Zea mays] |
| GenBank | EEC67024.1 | 0 | 17 | 347 | 413 | 743 | hypothetical protein OsI_33746 [Oryza sativa Indica Group] |
| RefSeq | NP_001108120.1 | 0 | 17 | 347 | 445 | 775 | starch synthase IIc precursor [Zea mays] |
| RefSeq | XP_002467190.1 | 0 | 17 | 347 | 176 | 506 | hypothetical protein SORBIDRAFT_01g021190 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 17 | 341 | 184 | 509 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 3vue_A | 0 | 17 | 341 | 184 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 44 | 339 | 171 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 44 | 346 | 171 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 44 | 346 | 171 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| HO781048 | 319 | 30 | 348 | 0 |
| FL691131 | 253 | 44 | 296 | 0 |
| HO795490 | 314 | 35 | 348 | 0 |
| JK551416 | 242 | 98 | 339 | 0 |
| FL691131 | 23 | 287 | 309 | 0.00002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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