| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00030733m |
| Family | PL4 |
| Protein Properties | Length: 622 Molecular Weight: 71485.2 Isoelectric Point: 4.7414 |
| Chromosome | Chromosome/Scaffold: 005805 Start: 12401 End: 15941 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 2 | 604 | 0 |
| EIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWNPPGQKTGIFDVIKGTEFRIIYHDENQAEVSFTRNWDPSLQGKVVPLNIDKRFI VLRGSSGFYTYGIYEHKEGWPDFGLGETRVAFKLRKDKFHYMELADDRQRIMPMPDDRLPPRGQPLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNN VHGWMSFDPPIGFWQITPSDEFRTGGPLKQNLTSHVGPTTLAMFLSAHYAGDDLSPIFTNGEYWKRVHGPVFMYLNSSWDGSDPTMLWEDAKVQMMIEKE SWPYYFALSEDFQKTEQRGCVSGRLLVRDRYIDDGDLYASGAYVGLALPGEAGSWQRECKGYQFWCRADVDGSFYIRNIVTGNYNLYAWVPGFIGDYKLD ATLTIASGDDIYLGDLVYQPPRDGPTMWEIGVPDRSAAEFYVPDPNPKYVNRLYINHPDRFRQYGLWERYAELYPDSDLVYTIGQSDYSTDWFYAQVNRK VDENTYQPTTWQIKFNLDSVSPGSTYKFRVALASSARAELQVFFNNKDMGVPHFATGLIGRDNAIARHGIHGLYWLFNINVNSAWLVQGMNTIYLKQPRN QSP | |||
| Full Sequence |
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| Protein Sequence Length: 622 Download |
| VEIKNGIFEL TLSNPDGIVT GVRYNGVDNL MEILNKEDNR GYWDLVWNPP GQKTGIFDVI 60 KGTEFRIIYH DENQAEVSFT RNWDPSLQGK VVPLNIDKRF IVLRGSSGFY TYGIYEHKEG 120 WPDFGLGETR VAFKLRKDKF HYMELADDRQ RIMPMPDDRL PPRGQPLAYP EAVLLVDPIN 180 PDLRGEVDDK YQYSCEDQYN NVHGWMSFDP PIGFWQITPS DEFRTGGPLK QNLTSHVGPT 240 TLAMFLSAHY AGDDLSPIFT NGEYWKRVHG PVFMYLNSSW DGSDPTMLWE DAKVQMMIEK 300 ESWPYYFALS EDFQKTEQRG CVSGRLLVRD RYIDDGDLYA SGAYVGLALP GEAGSWQREC 360 KGYQFWCRAD VDGSFYIRNI VTGNYNLYAW VPGFIGDYKL DATLTIASGD DIYLGDLVYQ 420 PPRDGPTMWE IGVPDRSAAE FYVPDPNPKY VNRLYINHPD RFRQYGLWER YAELYPDSDL 480 VYTIGQSDYS TDWFYAQVNR KVDENTYQPT TWQIKFNLDS VSPGSTYKFR VALASSARAE 540 LQVFFNNKDM GVPHFATGLI GRDNAIARHG IHGLYWLFNI NVNSAWLVQG MNTIYLKQPR 600 NQSPFQGLMY DYLRLEGPCD C* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 8.0e-31 | 318 | 417 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 5.0e-55 | 429 | 616 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 9.0e-69 | 3 | 279 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 8.0e-98 | 1 | 187 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD10227.1 | 0 | 1 | 619 | 25 | 643 | putative MYST1 [Oryza sativa Japonica Group] |
| GenBank | EEE69123.1 | 0 | 1 | 616 | 684 | 1299 | hypothetical protein OsJ_28233 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062464.1 | 0 | 1 | 618 | 38 | 655 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001062465.1 | 0 | 1 | 619 | 26 | 604 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445711.1 | 0 | 1 | 621 | 42 | 663 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FE632882 | 246 | 79 | 324 | 0 |
| GO843311 | 278 | 1 | 278 | 0 |
| GO850432 | 269 | 1 | 269 | 0 |
| JG785405 | 259 | 294 | 550 | 0 |
| GO850432 | 25 | 270 | 294 | 1.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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