Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030867m |
Family | GH5 |
Protein Properties | Length: 314 Molecular Weight: 34622.2 Isoelectric Point: 6.6209 |
Chromosome | Chromosome/Scaffold: 007397 Start: 11725 End: 13289 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 2 | 261 | 2.7e-27 |
LDFVVSEARKYRIRLILSLINNWDCYGGKAQYVKWAGDAGLNLTSDDDFFSDQTVKGYFKNHVKVMNTYTNVTYKDDPTIFAWEIMNELRCTSDPTGNKL QAWIREMAFHVKSIDPDHLLEVGAEGFYGPSSPARLQANPNTYAGQVGTDFIRNHRVLGVDFASVHIYPDTWMSGASVEEQLKFAQSWMQAHIADTEGEL GMPVVFTEFGVSTKARSTFNATSRDQFIQAVYGLLLDSTRRGGAGAGALLWQVFPEGMEY |
Full Sequence |
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Protein Sequence Length: 314 Download |
ALDFVVSEAR KYRIRLILSL INNWDCYGGK AQYVKWAGDA GLNLTSDDDF FSDQTVKGYF 60 KNHVKVMNTY TNVTYKDDPT IFAWEIMNEL RCTSDPTGNK LQAWIREMAF HVKSIDPDHL 120 LEVGAEGFYG PSSPARLQAN PNTYAGQVGT DFIRNHRVLG VDFASVHIYP DTWMSGASVE 180 EQLKFAQSWM QAHIADTEGE LGMPVVFTEF GVSTKARSTF NATSRDQFIQ AVYGLLLDST 240 RRGGAGAGAL LWQVFPEGME YMDDGYGIVL PKAKATAGIM SVNSKRLVVF NSRCAWSCHW 300 GCRKGGAAAV GGC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 2.0e-5 | 34 | 232 | 216 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 1.0e-25 | 2 | 216 | 216 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19893.1 | 0 | 1 | 304 | 143 | 449 | unknown [Glycine max] |
EMBL | CBI18019.1 | 0 | 1 | 304 | 152 | 458 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273230.1 | 0 | 1 | 304 | 91 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273389.1 | 0 | 1 | 304 | 91 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002466346.1 | 0 | 1 | 304 | 171 | 486 | hypothetical protein SORBIDRAFT_01g006080 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 1 | 287 | 86 | 369 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 2 | 254 | 102 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 2 | 254 | 102 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 2 | 254 | 102 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 2 | 254 | 102 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FK006634 | 269 | 6 | 270 | 0 |
EH727903 | 272 | 37 | 304 | 0 |
CF652410 | 276 | 18 | 289 | 0 |
EL422792 | 273 | 30 | 298 | 0 |
EX342522 | 276 | 1 | 272 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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