Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00030945m |
Family | CE8 |
Protein Properties | Length: 592 Molecular Weight: 63474.7 Isoelectric Point: 9.3398 |
Chromosome | Chromosome/Scaffold: 007020 Start: 10508 End: 14845 |
Description | pectin methylesterase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 280 | 575 | 0 |
LVVAKDGSGNFTTVGEAVAAAPNNSEARFVIYIKAGGYFENVEVGPEKTNLMFVGDGMWKTVIKASRNVADNSTTFRSATLAVVGTGFLARDLTVENASG PKKNQAVALRVNADLAAFYRCSFVGYQDTLYAHSLRQFYRDCDVYGTVDFVFGDAAAVLQGCSLYARRPERGQKNVVTAQGRTDPNQNTGIVVQGGKVAA AADLIPVLANFSSYLGRPWKLYSRTVFAQTKIEGLIHPRGWLEWNGSFALDTLYYAEYMNRGPGANTSARVAWPGYHVLTNATDAANFTVRNFIQG |
Full Sequence |
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Protein Sequence Length: 592 Download |
MPPRSRSAAA AKLPVTATFL SLALLLLPLG FLATHRTFSG GVAESTSAAE ERHRVLLAGN 60 DDGNADAAAA AEHAAAVDRH CACTLNRDVC ASTLATIPNL ARKPLRDVIS DVVARAAAAV 120 RASSSNCSSY LRRPQGLCVR DRLALSDCLE LFGSTLGQLG TAADELSAGN RTAEESIAGV 180 QTVLSAALTN QYTCLDGFAG PSASEDGRVR PYIQGRIYHV AHLVSNSLAM VRRLPQRRRR 240 GREALEGYGR VRRGFPSWVS AGDRRRLLQQ QGAPPAVADL VVAKDGSGNF TTVGEAVAAA 300 PNNSEARFVI YIKAGGYFEN VEVGPEKTNL MFVGDGMWKT VIKASRNVAD NSTTFRSATL 360 AVVGTGFLAR DLTVENASGP KKNQAVALRV NADLAAFYRC SFVGYQDTLY AHSLRQFYRD 420 CDVYGTVDFV FGDAAAVLQG CSLYARRPER GQKNVVTAQG RTDPNQNTGI VVQGGKVAAA 480 ADLIPVLANF SSYLGRPWKL YSRTVFAQTK IEGLIHPRGW LEWNGSFALD TLYYAEYMNR 540 GPGANTSARV AWPGYHVLTN ATDAANFTVR NFIQGDLWLN STSFPYTLGL S* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 3.0e-168 | 144 | 590 | 461 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02713 | PLN02713 | 3.0e-171 | 130 | 590 | 483 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02933 | PLN02933 | 4.0e-172 | 140 | 590 | 456 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 2.0e-177 | 139 | 590 | 456 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 279 | 576 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACQ85264.1 | 0 | 80 | 591 | 58 | 565 | pectin methylesterase [Musa acuminata AAA Group] |
GenBank | EEC82670.1 | 0 | 54 | 591 | 48 | 579 | hypothetical protein OsI_27314 [Oryza sativa Indica Group] |
RefSeq | NP_001060620.1 | 0 | 51 | 591 | 45 | 579 | Os07g0675100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002455538.1 | 0 | 80 | 590 | 48 | 576 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
RefSeq | XP_002463382.1 | 0 | 30 | 591 | 34 | 599 | hypothetical protein SORBIDRAFT_02g042780 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 279 | 590 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 277 | 590 | 2 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-24 | 281 | 547 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-24 | 281 | 547 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-24 | 281 | 547 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |