Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00031268m |
Family | GH28 |
Protein Properties | Length: 199 Molecular Weight: 21466.5 Isoelectric Point: 7.5783 |
Chromosome | Chromosome/Scaffold: 005892 Start: 145 End: 1574 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 151 | 0 |
ACGDDCISIQTGCSNINIHNVNCGPGHGISIGGLGRDNTKACVSNVTVRDVNMFRTMNGVRIKTWQGGVGLVQDIRFSNIQVSEVQTPIIIDQFYCDKST CRNQTSAVAVSGVQYENIRGTFTIKPVHFACSDSLPCSGISLTGVQLRPV |
Full Sequence |
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Protein Sequence Length: 199 Download |
MACGDDCISI QTGCSNINIH NVNCGPGHGI SIGGLGRDNT KACVSNVTVR DVNMFRTMNG 60 VRIKTWQGGV GLVQDIRFSN IQVSEVQTPI IIDQFYCDKS TCRNQTSAVA VSGVQYENIR 120 GTFTIKPVHF ACSDSLPCSG ISLTGVQLRP VQVPHYHLNN PFCWQAFGEL YTPTVPPIAC 180 LQIGKPAGNN LQTYNDIC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-29 | 1 | 149 | 153 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 5.0e-30 | 1 | 198 | 203 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-36 | 4 | 149 | 147 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-38 | 4 | 148 | 146 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-41 | 4 | 181 | 180 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35722.1 | 0 | 1 | 198 | 344 | 541 | unknown [Zea mays] |
GenBank | EAY75104.1 | 0 | 1 | 198 | 177 | 374 | hypothetical protein OsI_03000 [Oryza sativa Indica Group] |
RefSeq | NP_001148771.1 | 0 | 1 | 198 | 344 | 541 | polygalacturonase [Zea mays] |
RefSeq | NP_001150912.1 | 0 | 1 | 198 | 339 | 536 | polygalacturonase [Zea mays] |
RefSeq | XP_002456022.1 | 0 | 1 | 198 | 335 | 532 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.00000000000002 | 5 | 149 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000002 | 5 | 149 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000002 | 5 | 149 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000002 | 5 | 149 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.00000000000002 | 5 | 149 | 175 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL996002 | 199 | 1 | 199 | 0 |
CX609536 | 199 | 1 | 199 | 0 |
EB402734 | 198 | 1 | 198 | 0 |
FL803451 | 199 | 1 | 199 | 0 |
JK608130 | 199 | 1 | 199 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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