| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00031532m |
| Family | GT5 |
| Protein Properties | Length: 251 Molecular Weight: 27778.6 Isoelectric Point: 5.6342 |
| Chromosome | Chromosome/Scaffold: 0130103 Start: 192 End: 3135 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 2 | 236 | 0 |
| LAAKYRPFGVYKDSRSILVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSKGYSWEVTTAEGGQGLD ELLSSRKSVLNGIVNGIDINDWNPATDEHIPYHYSADDLSGKAKCKAALQKELGLPIRPDVPLIGFIGRLDYQKGIDLIKLIMPNLMQDDIQFVMLGSGD PELEDWMRSTESNFRDKFRGWVGFSVPVSHRITAG | |||
| Full Sequence |
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| Protein Sequence Length: 251 Download |
| LLAAKYRPFG VYKDSRSILV IHNLAHQGVE PASTYPDLGL PPEWYGALEW VFPEWARRHA 60 LDKGEAVNFL KGAVVTADRI VTVSKGYSWE VTTAEGGQGL DELLSSRKSV LNGIVNGIDI 120 NDWNPATDEH IPYHYSADDL SGKAKCKAAL QKELGLPIRP DVPLIGFIGR LDYQKGIDLI 180 KLIMPNLMQD DIQFVMLGSG DPELEDWMRS TESNFRDKFR GWVGFSVPVS HRITAGYTNN 240 PLPKDSLAIS * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-53 | 17 | 236 | 228 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 1.0e-71 | 1 | 236 | 236 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 1.0e-91 | 1 | 236 | 238 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 7.0e-93 | 1 | 236 | 236 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-101 | 1 | 236 | 236 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD45815.2 | 0 | 1 | 236 | 293 | 528 | soluble starch synthase [Sorghum bicolor] |
| GenBank | AAD49850.1 | 0 | 1 | 236 | 287 | 522 | AF165890_1 soluble starch synthase [Oryza sativa Japonica Group] |
| GenBank | ACN36715.1 | 0 | 1 | 236 | 15 | 250 | unknown [Zea mays] |
| DDBJ | BAA03739.1 | 0 | 1 | 236 | 287 | 522 | soluble starch synthase precursor [Oryza sativa] |
| RefSeq | NP_001104892.1 | 0 | 1 | 236 | 286 | 521 | plastid starch synthase I precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 7.00649e-45 | 2 | 236 | 171 | 401 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3vue_A | 7.00649e-45 | 2 | 236 | 171 | 401 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 6e-34 | 2 | 236 | 147 | 366 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 7e-34 | 2 | 236 | 147 | 366 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 7e-34 | 2 | 236 | 147 | 366 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GD048493 | 236 | 1 | 236 | 0 |
| FL959881 | 236 | 1 | 236 | 0 |
| FE599731 | 231 | 1 | 231 | 0 |
| CN147393 | 236 | 1 | 236 | 0 |
| JG964056 | 217 | 20 | 236 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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