Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00031700m |
Family | CBM43 |
Protein Properties | Length: 597 Molecular Weight: 62235.8 Isoelectric Point: 7.3612 |
Chromosome | Chromosome/Scaffold: 013091 Start: 9047 End: 11335 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 417 | 498 | 2.1e-33 |
WCVAKTGLTDLELQNGIDYACGIGQADCSALQPMGACYNPNTLQAHASYAFNSYFQRNPSPTSCDFGGAGMLVNVNPSSGTC |
Full Sequence |
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Protein Sequence Length: 597 Download |
MAATCPLALT FFFFCCILFE TISCSGAFVE LSYDSTKVKI LSSSVITEYR VVVTEKQHAY 60 LFLKPFECSR KPCRPEHLAG SFVNEVLDPN RHLNVSNIIV MAKERQLGAL RRTLQSIHAH 120 LRAVGLGKSV KVSPELLQSS IRIMANNRAQ KKQWGKVMEF VRRSGSFVQL EIEANSEHTV 180 DVEIQEAVAD VAALLGADAG VVLHLKSRAA PSAEAMTNLV GVITREKRLL GVLVDVSSPR 240 RELGEARATA HDEFSPVTNP AAMPVANPVT VPATNPVSNP MSPGFVTVPS TNPGNGFSTS 300 PNLPPLYPEP KTPVTMPDPT TMPPATVPTP FTSPVTAPTM PGPVTNPAAP VSNPATTPTT 360 QFPGTSPVTN PVTTYPYPQQ GGGAGAGGMP ATPVYQPPAT MPGTAQPGAP AVGGQTWCVA 420 KTGLTDLELQ NGIDYACGIG QADCSALQPM GACYNPNTLQ AHASYAFNSY FQRNPSPTSC 480 DFGGAGMLVN VNPSSGTCMY QTSAGFGAGY SPGATGTAPT GYTPGMSGAV PGSYSPGWTG 540 GSGSTVLNAN NPGGNSMYGG SDNPTGLTAG TAPLSCCGWV LCLIWMVTFA FVKEKV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 8.0e-20 | 416 | 487 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-38 | 416 | 500 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF99731.1 | 0 | 1 | 596 | 1 | 575 | expressed protein [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN28117.1 | 0 | 2 | 596 | 3 | 587 | unknown [Zea mays] |
GenBank | ACN28414.1 | 0 | 2 | 596 | 3 | 613 | unknown [Zea mays] |
RefSeq | NP_001142611.1 | 0 | 2 | 596 | 3 | 610 | hypothetical protein LOC100274879 [Zea mays] |
RefSeq | XP_002463588.1 | 0 | 1 | 596 | 1 | 615 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 4e-17 | 416 | 500 | 12 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |