CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00031712m
FamilyGH18
Protein PropertiesLength: 287 Molecular Weight: 31279.4 Isoelectric Point: 5.2351
ChromosomeChromosome/Scaffold: 0126423 Start: 2240 End: 3205
Description
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18222036.4e-21
  DVPINAMLSFHFILAFAIDYTPVGQPTPPAPTNGVFRPFWDTANLSPSAVAAFKAAHPNVAVMAGLGGDSVQDVVKAVFTPTSVDSWVSNAAASLTAIIN
  AYGLDGVDVDYEHFAAGADVGTFVECVGQLLTRLKRTMPWITTSIAPFEDPVIQRYYQPLWRKYGGVIDYVNFQFYGYGANT
Full Sequence
Protein Sequence     Length: 287     Download
MTNGYLFREY IGAQFTGVQF ADVPINAMLS FHFILAFAID YTPVGQPTPP APTNGVFRPF    60
WDTANLSPSA VAAFKAAHPN VAVMAGLGGD SVQDVVKAVF TPTSVDSWVS NAAASLTAII    120
NAYGLDGVDV DYEHFAAGAD VGTFVECVGQ LLTRLKRTMP WITTSIAPFE DPVIQRYYQP    180
LWRKYGGVID YVNFQFYGYG ANTDVPLYIR FYDEQTANYP GARVLASFMT GNTTGLISPD    240
LGISAAKELQ RQNKLPGLFI WSADSSKKSS YGFKYEIQGQ QIIANH* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd06545GH18_3CO4_chitinase0.00014145146+
smart00636Glyco_185.0e-632208191+
pfam00704Glyco_hydro_182.0e-832199171+
cd00598GH18_chitinase-like3.0e-1432265236+
cd06544GH18_narbonin4.0e-1156266262+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankEAY78491.1012861288hypothetical protein OsI_33583 [Oryza sativa Indica Group]
RefSeqNP_001064608.1012861288Os10g0416800 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001131214.1012861286hypothetical protein LOC100192522 [Zea mays]
RefSeqNP_001148230.1012861286chitinase 1 [Zea mays]
RefSeqXP_002449257.1012861286hypothetical protein SORBIDRAFT_05g006880 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3sim_B062832273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB3sim_A062832273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB1nar_A6e-3162844288A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB1h0i_B0.000085419755214A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB1h0i_A0.000085419755214A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
Metabolic Pathways
Pathway NameReactionECProtein Name
chitin degradation II3.2.1.14-RXNEC-3.2.1.14chitinase
chitin degradation IIRXN-12623EC-3.2.1.14chitinase
chitin degradation IIRXN-12624EC-3.2.1.14chitinase
chitin degradation III (carnivorous plants)3.2.1.14-RXNEC-3.2.1.14chitinase
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
FE61044224312430
FE61201624112410
FE61139623012300
EE17801727412740
FL88782122412240
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_046_00008.1Aquca_014_00353.1Aquca_010_00636.1Aquca_027_00184.1
Brachypodium distachyonBradi3g26850.1Bradi3g26810.1Bradi3g26840.1
Carica papayaevm.model.supercontig_139.6
Citrus clementinaCiclev10028881mCiclev10003729m
Citrus sinensisorange1.1g021511morange1.1g046094m
Eucalyptus grandisEucgr.B02439.1Eucgr.J02106.1
Fragaria vescamrna14033.1-v1.0-hybrid.59.211mrna14019.1-v1.0-hybridmrna15882.1-v1.0-hybridmrna14034.1-v1.0-hybridmrna17899.1-v1.0-hybrid
mrna22564.1-v1.0-hybrid
Glycine maxGlyma11g15512.1Glyma09g21615.1Glyma13g40590.1
Gossypium raimondiiGorai.003G135700.1Gorai.003G135800.1Gorai.003G134100.1Gorai.003G129600.1Gorai.011G120000.1
Gorai.003G138400.1
Linum usitatissimumLus10005172
Malus domesticaMDP0000904158MDP0000885802MDP0000644797MDP0000312089
Manihot esculentacassava4.1_024209mcassava4.1_027074m
Medicago truncatulaMedtr6g079630.1Medtr2g096030.1
Mimulus guttatusmgv1a019267mmgv1a024804m
Oryza sativaLOC_Os10g28050.1LOC_Os10g28080.1
Panicum virgatumPavirv00061810mPavirv00014582m
Phaseolus vulgarisPhvul.011G069900.1
Picea abiesMA_38396g0010MA_10427109g0010
Populus trichocarpaPotri.012G102400.1Potri.015G100500.1Potri.015G100600.1Potri.001G341700.1
Prunus persicappa023801mppa009038mppa009096m
Ricinus communis30039.m00023530039.m000234
Setaria italicaSi022612mSi026720mSi028172mSi036765mSi036774m
Selaginella moellendorffii41118115493
Sorghum bicolorSb01g021920.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny