Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00031734m |
Family | GT47 |
Protein Properties | Length: 385 Molecular Weight: 43644.2 Isoelectric Point: 6.6434 |
Chromosome | Chromosome/Scaffold: 0128825 Start: 128 End: 1746 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 17 | 312 | 0 |
KLKVFVYEMPRKYNQMLLAKDSRCLHHMFAAEIFMHQFLLSSAVRTLDPEEADWFYTPVYTTCDLTPQGFPLPFRAPRIMRSAIKYVATTWPYWNRTEGA DHFFLTPHDFGACFHYQEERAMVRGILPLLRRATLVQTFGQRNHVCLQEGSITIPPYANPHKMQAHLINPGTPRSIFVYFRGLFYDMGNDPEGSYYARGA RASVWENFKDNPLFDISTEHPSTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEQISVFVAERDVPRLDSILTSI |
Full Sequence |
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Protein Sequence Length: 385 Download |
MAAGDAGGVL DDNPVGKLKV FVYEMPRKYN QMLLAKDSRC LHHMFAAEIF MHQFLLSSAV 60 RTLDPEEADW FYTPVYTTCD LTPQGFPLPF RAPRIMRSAI KYVATTWPYW NRTEGADHFF 120 LTPHDFGACF HYQEERAMVR GILPLLRRAT LVQTFGQRNH VCLQEGSITI PPYANPHKMQ 180 AHLINPGTPR SIFVYFRGLF YDMGNDPEGS YYARGARASV WENFKDNPLF DISTEHPSTY 240 YEDMQRAIFC LCPLGWAPWS PRLVEAVVFG CIPVIIADDI VLPFADAIPW EQISVFVAER 300 DVPRLDSILT SIPLQDILRK QRLLAAASVK QALLFHQPAR PGDAFDQILN GLARKLPHAK 360 GVFLQPGEKV LDWDAGLESD LKPW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-82 | 17 | 312 | 304 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG43504.1 | 0 | 3 | 384 | 39 | 420 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
GenBank | ACN31576.1 | 0 | 2 | 384 | 30 | 412 | unknown [Zea mays] |
GenBank | ACR34554.1 | 0 | 2 | 384 | 30 | 412 | unknown [Zea mays] |
GenBank | EAY77054.1 | 0 | 3 | 384 | 41 | 422 | hypothetical protein OsI_05011 [Oryza sativa Indica Group] |
RefSeq | XP_002459015.1 | 0 | 3 | 384 | 34 | 415 | hypothetical protein SORBIDRAFT_03g044510 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO868810 | 331 | 30 | 360 | 0 |
GO846508 | 325 | 61 | 385 | 0 |
GO872051 | 326 | 27 | 352 | 0 |
FL823261 | 265 | 21 | 285 | 0 |
GO871901 | 320 | 12 | 331 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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