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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00031794m |
Family | GT8 |
Protein Properties | Length: 465 Molecular Weight: 51212.8 Isoelectric Point: 7.4638 |
Chromosome | Chromosome/Scaffold: 012407 Start: 2934 End: 6217 |
Description | galacturonosyltransferase 15 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 112 | 434 | 0 |
CLTLRLAEEFAVNSAARSPVPPPEHAPRLTDASYLHVALVTDNVLAAAVAVASAARSAANPGRLVFHVVTDKKSYVPMHSWFALHPASPAAVEVKGLHQF DWRDGGVVASVMRTVEEVQRSSLDYHRSGGSSAEREHRRLQASKPSTFSLLNYLKIHLPEFFPELGRVVLLDDDVVVRKDLTGLWEQDLDGNIIGAVGAR EGGGICTDKTLGDHLNFSDPAVSGLLSSQCAWSWGVNIIDLDAWRRTNVTETYQLWLQKNRESGFRLWQMASLPPALIAFDGRVQAIEPLWHLPGLGRRV PDPEAARSSAVLHFSGPRKPWLE |
Full Sequence |
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Protein Sequence Length: 465 Download |
MKEWRRTHRA ATLLDPVVVE AAPDSLDALM AEMGAALASY DGRLDMEAVA VKMMAMLASC 60 PACYHLSFQL STAKDCIVYE LLKMDRKVKS SRVRALFKRH LASLGVPKSV HCLTLRLAEE 120 FAVNSAARSP VPPPEHAPRL TDASYLHVAL VTDNVLAAAV AVASAARSAA NPGRLVFHVV 180 TDKKSYVPMH SWFALHPASP AAVEVKGLHQ FDWRDGGVVA SVMRTVEEVQ RSSLDYHRSG 240 GSSAEREHRR LQASKPSTFS LLNYLKIHLP EFFPELGRVV LLDDDVVVRK DLTGLWEQDL 300 DGNIIGAVGA REGGGICTDK TLGDHLNFSD PAVSGLLSSQ CAWSWGVNII DLDAWRRTNV 360 TETYQLWLQK NRESGFRLWQ MASLPPALIA FDGRVQAIEP LWHLPGLGRR VPDPEAARSS 420 AVLHFSGPRK PWLEVAFPEL RQLWLGHLNA SDSFLQGCGV LEWQ* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02742 | PLN02742 | 3.0e-65 | 101 | 458 | 362 | + Probable galacturonosyltransferase | ||
cd06429 | GT8_like_1 | 5.0e-81 | 172 | 449 | 279 | + GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. | ||
PLN02659 | PLN02659 | 4.0e-103 | 23 | 460 | 450 | + Probable galacturonosyltransferase | ||
PLN02870 | PLN02870 | 1.0e-108 | 23 | 462 | 451 | + Probable galacturonosyltransferase | ||
PLN02867 | PLN02867 | 4.0e-124 | 20 | 461 | 451 | + Probable galacturonosyltransferase |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN34134.1 | 0 | 1 | 464 | 1 | 438 | unknown [Zea mays] |
GenBank | EEC71413.1 | 0 | 1 | 462 | 79 | 518 | hypothetical protein OsI_03591 [Oryza sativa Indica Group] |
RefSeq | NP_001044121.1 | 0 | 1 | 462 | 97 | 536 | Os01g0727100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147797.1 | 0 | 1 | 464 | 95 | 532 | transferase, transferring glycosyl groups [Zea mays] |
RefSeq | XP_002456278.1 | 0 | 1 | 464 | 33 | 473 | hypothetical protein SORBIDRAFT_03g033400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ss9_A | 0.0000002 | 260 | 432 | 80 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1ga8_A | 0.000003 | 260 | 432 | 80 | 252 | A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc |
PDB | 1g9r_A | 0.000003 | 260 | 432 | 80 | 252 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan biosynthesis | 2.4.1.43-RXN | EC-2.4.1.43 | polygalacturonate 4-α-galacturonosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL897009 | 234 | 172 | 405 | 0 |
FL902042 | 217 | 172 | 388 | 0 |
CB656533 | 273 | 3 | 275 | 0 |
FE636783 | 151 | 1 | 147 | 0 |
FE636782 | 151 | 1 | 147 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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