| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00032012m |
| Family | GT5 |
| Protein Properties | Length: 705 Molecular Weight: 75710.4 Isoelectric Point: 6.4763 |
| Chromosome | Chromosome/Scaffold: 012694 Start: 4830 End: 9468 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 214 | 697 | 0 |
| NIVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRRRYKVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNDIYGGKRM DVLKRMILFCKAAVEVPWYAPCGGAVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFFNFDLPEHYIDHFKLYDPV GGDHSNVFAAGLKMADRVVTVSSGYLWELKTSEGGWGLHDIINQHDWKLQGIVNGIDMGEWNPAVDVHLHSDGYTNYTFETLDTGKRQCKAALQQQLGLQ ARDDVPLIGFIGRLDHQKGVDIIADAIHWIAGQDVQLVMLGTGRPDLEDLLRRCEAEHKDKVRAWVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFADAGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVL | |||
| Full Sequence |
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| Protein Sequence Length: 705 Download |
| MSGAIASSSS AFLLLVASSS PRRRRSRVGA ALHSYGYGGA GLRLHWALRG PPRDASAPVR 60 AAAAPGGSEG EEAAAAGESS TSTPKGVAVQ GSKAKAADSA SPPKAVTSAP KQRRSAANEN 120 GALGSSSASK SAAPVSEPPT AESPAPVSET EMDASAKVAE PKPAALDDAK ESVGIAEPVE 180 AKADASAATE AAAGAADDSE GKEPGPLAGP NVMNIVVVAS ECAPFCKTGG LGDVVGALPK 240 ALARRGHRVM VVIPRYGEYA EARDLGVRRR YKVAGQDSEV TYFHSYIDGV DFVFIEAPPF 300 RHRHNDIYGG KRMDVLKRMI LFCKAAVEVP WYAPCGGAVY GDGNLVFIAN DWHTALLPVY 360 LKAYYRDNGL MQYARSVLVI HNIAHQGRGP VDDFFNFDLP EHYIDHFKLY DPVGGDHSNV 420 FAAGLKMADR VVTVSSGYLW ELKTSEGGWG LHDIINQHDW KLQGIVNGID MGEWNPAVDV 480 HLHSDGYTNY TFETLDTGKR QCKAALQQQL GLQARDDVPL IGFIGRLDHQ KGVDIIADAI 540 HWIAGQDVQL VMLGTGRPDL EDLLRRCEAE HKDKVRAWVG FSVPMAHRIT AGADVLLMPS 600 RFEPCGLNQL YAMAYGTVPV VHAVGGLRDT VAPFDPFADA GLGWTFDRAE ANRMIDALGH 660 CLNTYRNYKE SWRGLQARGM AQDLSWDHAA ELYEDVLVKA KYQW* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 4.0e-77 | 213 | 693 | 501 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 1.0e-127 | 213 | 695 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 3.0e-159 | 213 | 697 | 497 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 213 | 700 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 214 | 697 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86845.1 | 0 | 12 | 704 | 12 | 704 | starch synthase IIb precursor [Sorghum bicolor] |
| GenBank | ACN31779.1 | 0 | 1 | 704 | 1 | 698 | unknown [Zea mays] |
| RefSeq | NP_001104880.1 | 0 | 1 | 704 | 1 | 698 | starch synthase isoform zSTSII-2 [Zea mays] |
| RefSeq | NP_001106014.1 | 0 | 28 | 704 | 29 | 704 | starch synthase IIb-2 precursor [Zea mays] |
| RefSeq | XP_002452556.1 | 0 | 12 | 704 | 12 | 704 | hypothetical protein SORBIDRAFT_04g028060 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 213 | 698 | 10 | 509 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
| PDB | 3vue_A | 0 | 213 | 698 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 213 | 701 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 213 | 703 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 213 | 703 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 312 | 394 | 705 | 0 |
| HO777841 | 191 | 204 | 394 | 0 |
| HO781048 | 394 | 312 | 705 | 0 |
| HO445868 | 438 | 268 | 705 | 0 |
| HO781048 | 38 | 275 | 312 | 2.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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