| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00032807m |
| Family | CE8 |
| Protein Properties | Length: 440 Molecular Weight: 47577.1 Isoelectric Point: 9.4868 |
| Chromosome | Chromosome/Scaffold: 0127660 Start: 1 End: 1587 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 140 | 433 | 0 |
| CTYSTVQAAVDAAPNYTAGHFVIAVAAGTYKENVIIPYEKTNILLLGEGVGATVITASRSVGIDGLGTFDTATVSVIGDGFRARDVTFENNAGAGAHQAV AFRSDSDRSVLENVEFRGHQDTLYARTMRQLYRRCHIIGTVDFIFGNAAVVFEECVIKTVPRAEGARKSARNVVAANGRIDPGQTTGFVFSNCTVDGNKE FVELFQTKPQSYRLYLGRPWKEYARTLYVRCYLGKVIRPEGWLPWRGDFAVRTLYYGEFDSRGPGANRTARVEWSNQTPEKHAKLYSVENFIQG | |||
| Full Sequence |
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| Protein Sequence Length: 440 Download |
| LLALRPAAPP AGAGGPASLL RAAVALHPSP AAYERPCANH LALSLRRLRA ALASLEAGDV 60 PAALHLASAS LQCQYDCSHL LSLPAFRSHP LTSRFLNSLA PRSLTAAPKH FSAAASAPAF 120 PARIRPDATV CKPNPGAKPC TYSTVQAAVD AAPNYTAGHF VIAVAAGTYK ENVIIPYEKT 180 NILLLGEGVG ATVITASRSV GIDGLGTFDT ATVSVIGDGF RARDVTFENN AGAGAHQAVA 240 FRSDSDRSVL ENVEFRGHQD TLYARTMRQL YRRCHIIGTV DFIFGNAAVV FEECVIKTVP 300 RAEGARKSAR NVVAANGRID PGQTTGFVFS NCTVDGNKEF VELFQTKPQS YRLYLGRPWK 360 EYARTLYVRC YLGKVIRPEG WLPWRGDFAV RTLYYGEFDS RGPGANRTAR VEWSNQTPEK 420 HAKLYSVENF IQGHQWIAY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02713 | PLN02713 | 2.0e-96 | 142 | 437 | 305 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-99 | 124 | 437 | 317 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 5.0e-102 | 124 | 437 | 319 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 7.0e-131 | 127 | 433 | 313 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 3.0e-155 | 124 | 437 | 315 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02750.2 | 0 | 10 | 439 | 47 | 480 | OSJNBa0006B20.19 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAH67582.1 | 0 | 10 | 439 | 45 | 478 | H0315A08.12 [Oryza sativa (indica cultivar-group)] |
| GenBank | EAY94221.1 | 0 | 10 | 439 | 47 | 480 | hypothetical protein OsI_15995 [Oryza sativa Indica Group] |
| RefSeq | NP_001140854.1 | 0 | 16 | 439 | 46 | 471 | hypothetical protein LOC100272930 [Zea mays] |
| RefSeq | XP_002446513.1 | 0 | 16 | 439 | 46 | 468 | hypothetical protein SORBIDRAFT_06g017280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 142 | 437 | 19 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 142 | 437 | 15 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 0.00000000000001 | 127 | 359 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.00000000000001 | 127 | 359 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.00000000000002 | 127 | 359 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FL760482 | 254 | 187 | 440 | 0 |
| EL684347 | 259 | 179 | 437 | 0 |
| FL811362 | 214 | 24 | 237 | 0 |
| DT745154 | 276 | 162 | 437 | 0 |
| FL811362 | 27 | 232 | 258 | 0.0005 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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