CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00033212m
FamilyGH18
Protein PropertiesLength: 286 Molecular Weight: 32238.9 Isoelectric Point: 7.6858
ChromosomeChromosome/Scaffold: 0124253 Start: 433 End: 3067
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18202593.3e-23
  VLAYVTPWNSKGYDMAKLFSAKLTHISPVWYDLKSDRNMLVLEGEHNFDATWVSELQGNGSLVVPRVVLEAFPAVILLEKMQKAKAIDLIVSECRDKGYD
  GIVLESWSRWAVYGVLDDPELRYMALQFVKQLGEALHSISSKSSNRHLELIYVIPAPRMQELSNQDFGPEDLLQLADSLDGFSLMTYDFSGPQNPGPSAP
  LKWVQHSLTTLLSAKGSSPSGNHSRMIFLGINFYGNDFLL
Full Sequence
Protein Sequence     Length: 286     Download
MQEHTRVSEK RSQRQFPNPV LAYVTPWNSK GYDMAKLFSA KLTHISPVWY DLKSDRNMLV    60
LEGEHNFDAT WVSELQGNGS LVVPRVVLEA FPAVILLEKM QKAKAIDLIV SECRDKGYDG    120
IVLESWSRWA VYGVLDDPEL RYMALQFVKQ LGEALHSISS KSSNRHLELI YVIPAPRMQE    180
LSNQDFGPED LLQLADSLDG FSLMTYDFSG PQNPGPSAPL KWVQHSLTTL LSAKGSSPSG    240
NHSRMIFLGI NFYGNDFLLS RACATWRHAC LKFVFGLHLR RSVSY* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
COG3858COG38586.0e-695260174+
pfam00704Glyco_hydro_185.0e-9102257162+
cd02874GH18_CFLE_spore_hydrolase3.0e-1220259252+
smart00636Glyco_181.0e-2320257261+
cd02876GH18_SI-CLP1.0e-10116262253+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG34172.10125787343hydrolase, hydrolyzing O-glycosyl compounds [Zea mays]
GenBankEEC71106.10126292353hypothetical protein OsI_02892 [Oryza sativa Indica Group]
GenBankEEE55003.10126292353hypothetical protein OsJ_02637 [Oryza sativa Japonica Group]
RefSeqNP_001130247.10125787343hypothetical protein LOC100191341 [Zea mays]
RefSeqXP_002455966.10126487350hypothetical protein SORBIDRAFT_03g028160 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A3e-38126162310B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B3e-38126162310B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
JG800501229362640
DN211047226322570
DN213576228302570
AV927011227312560
JG906885202732740
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Brassica rapaBra000939
Carica papayaevm.model.supercontig_273.9
Capsella rubellaCarubv10001405m
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Medicago truncatulaMedtr5g025480.1
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00054484m
Physcomitrella patensPp1s162_65V6.1
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Sorghum bicolorSb03g028160.1
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny