| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00033330m |
| Family | AA1 |
| Protein Properties | Length: 506 Molecular Weight: 56289.8 Isoelectric Point: 7.972 |
| Chromosome | Chromosome/Scaffold: 0124856 Start: 53 End: 2471 |
| Description | laccase 7 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 14 | 503 | 0 |
| SDEHGVKQVRNCWADGVPMVTQCPIMPNKNFTYWFNVVGQEGTLWWHSHVPGLRATLHGAFIIRPRHGAASYPFPKPHREIPVIIVFPWLCNFLVDRCEM ILMITGDWWEKDPAEVARNMTKSIFSSYASASTVNGLVGDLFNCSGVAKEGYVLDVEPGKTYLLRIINAGLFSEFYLKIAGHKFTVVAADANYVRPFTTE VIAIAPGETVDALLIADAHPGRYYMVGLPNQAPLPDTQTPEYATRGMVQYMVSQGPCSGTEVGCRGPSADVPIVPKMPDIHDTVTSFYFHSNLTSLQHHA HLLVQQRVDQRMFVVLGLGTICKQGHKFCKRGDSDEDILVATMNNVSFLPPTSKSLLEAHYYHTGRHGMTQDLPKMPPKLYNFTDEALIPFGPKEMRLEP TYKATLVRRFQQGAVVEIVFQSTAMLQGDSNPMHLHGHDMVVLAQGLGSYDPVKDGARYNYVNPPVKNTVLVPNLGWIAIRFVANNPGAY | |||
| Full Sequence |
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| Protein Sequence Length: 506 Download |
| MRRREAARFI GACSDEHGVK QVRNCWADGV PMVTQCPIMP NKNFTYWFNV VGQEGTLWWH 60 SHVPGLRATL HGAFIIRPRH GAASYPFPKP HREIPVIIVF PWLCNFLVDR CEMILMITGD 120 WWEKDPAEVA RNMTKSIFSS YASASTVNGL VGDLFNCSGV AKEGYVLDVE PGKTYLLRII 180 NAGLFSEFYL KIAGHKFTVV AADANYVRPF TTEVIAIAPG ETVDALLIAD AHPGRYYMVG 240 LPNQAPLPDT QTPEYATRGM VQYMVSQGPC SGTEVGCRGP SADVPIVPKM PDIHDTVTSF 300 YFHSNLTSLQ HHAHLLVQQR VDQRMFVVLG LGTICKQGHK FCKRGDSDED ILVATMNNVS 360 FLPPTSKSLL EAHYYHTGRH GMTQDLPKMP PKLYNFTDEA LIPFGPKEMR LEPTYKATLV 420 RRFQQGAVVE IVFQSTAMLQ GDSNPMHLHG HDMVVLAQGL GSYDPVKDGA RYNYVNPPVK 480 NTVLVPNLGW IAIRFVANNP GAYKI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00394 | Cu-oxidase | 2.0e-30 | 119 | 252 | 134 | + Multicopper oxidase. Many of the proteins in this family contain multiple similar copies of this plastocyanin-like domain. | ||
| PLN02191 | PLN02191 | 3.0e-45 | 17 | 503 | 517 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 2.0e-46 | 17 | 503 | 491 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 9.0e-52 | 17 | 503 | 514 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 3.0e-136 | 17 | 503 | 493 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001064399.1 | 0 | 17 | 503 | 98 | 562 | Os10g0346300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130676.1 | 0 | 17 | 503 | 86 | 555 | hypothetical protein LOC100191779 [Zea mays] |
| RefSeq | NP_001146681.1 | 0 | 17 | 505 | 98 | 564 | hypothetical protein LOC100280281 [Zea mays] |
| RefSeq | XP_002449982.1 | 0 | 17 | 505 | 89 | 560 | hypothetical protein SORBIDRAFT_05g026630 [Sorghum bicolor] |
| RefSeq | XP_002457562.1 | 0 | 17 | 503 | 88 | 553 | hypothetical protein SORBIDRAFT_03g009410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 6e-38 | 17 | 503 | 62 | 503 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
| PDB | 1asq_A | 6e-38 | 17 | 503 | 62 | 503 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
| PDB | 1asp_B | 6e-38 | 17 | 503 | 62 | 503 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
| PDB | 1asp_A | 6e-38 | 17 | 503 | 62 | 503 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
| PDB | 1aso_B | 6e-38 | 17 | 503 | 62 | 503 | A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JK593019 | 224 | 282 | 503 | 0 |
| DV532530 | 322 | 69 | 382 | 0 |
| EG387700 | 290 | 76 | 365 | 0 |
| HO797675 | 496 | 17 | 503 | 0 |
| CA146254 | 228 | 282 | 503 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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