Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00033556m |
Family | GH3 |
Protein Properties | Length: 592 Molecular Weight: 63058.4 Isoelectric Point: 6.1496 |
Chromosome | Chromosome/Scaffold: 027128 Start: 58 End: 3437 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 84 | 337 | 0 |
AVPRLGVPAYKWWSEALHGVSDHGRGVHLSGPLRAATSFPQVILTAASFNPHLWYRIGQVIGVEARAVYNNGQAEGLTFWAPNINVFRDPRWGRGQETPG EDPTVTGKYAAVFVRGVQGYGISGPVNSTDLEASACCKHFTAYDLENWKSVTRYVFDAKVTAQDLEDTYNPPFKSCVEDGHASGIMCSYNRVNGVPTCAD YNLLSKTARQNWGFYGYITSDCDAVSIIHDAQGYAKTAEDAVADVLKAGMDVNC |
Full Sequence |
---|
Protein Sequence Length: 592 Download |
MGRRARSCPH VAAPAAVLLL LLLHLVLAPH AAAASDPPYT CGAGAPPNIP FCDTGLPIDR 60 RVGDLIARMT VAEKISQLGD ESPAVPRLGV PAYKWWSEAL HGVSDHGRGV HLSGPLRAAT 120 SFPQVILTAA SFNPHLWYRI GQVIGVEARA VYNNGQAEGL TFWAPNINVF RDPRWGRGQE 180 TPGEDPTVTG KYAAVFVRGV QGYGISGPVN STDLEASACC KHFTAYDLEN WKSVTRYVFD 240 AKVTAQDLED TYNPPFKSCV EDGHASGIMC SYNRVNGVPT CADYNLLSKT ARQNWGFYGY 300 ITSDCDAVSI IHDAQGYAKT AEDAVADVLK AGMDVNCGSY VQQHGASALQ QGKITEQDID 360 RALHNLFAVR MRLGLFNGDP RRNRFGNIGP DQVCSQEHQD LALQAAQEGI VLLKNDGAAL 420 PLSKSTVASL GVIGFNANDA TRLLGNYFGP PCVTATPLQV LQGYVKDTRF AAGCNAAACN 480 VTAIPEAVQV ASSVDSVVLF MGLDQDQERE EVDRLDLTLP GQQQSLIESV ANAAKKPVIL 540 VLLCGGPVDV SFAKTNPKIG AILWAGYPGE AGGMAIAQVL FGEHNPGGGY R* 600 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-40 | 410 | 588 | 185 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 5.0e-56 | 59 | 439 | 388 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 3.0e-60 | 59 | 588 | 607 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 1.0e-61 | 70 | 362 | 323 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PLN03080 | PLN03080 | 0 | 35 | 588 | 559 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK38482.1 | 0 | 34 | 588 | 29 | 581 | beta-D-xylosidase [Hordeum vulgare] |
GenBank | EEC74020.1 | 0 | 1 | 588 | 1 | 577 | hypothetical protein OsI_08964 [Oryza sativa Indica Group] |
RefSeq | NP_001048140.1 | 0 | 44 | 588 | 39 | 583 | Os02g0752200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130324.1 | 0 | 2 | 588 | 3 | 586 | hypothetical protein LOC100191418 [Zea mays] |
RefSeq | XP_002452540.1 | 0 | 33 | 588 | 34 | 589 | hypothetical protein SORBIDRAFT_04g027700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 9.80909e-45 | 120 | 588 | 91 | 563 | A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 |
PDB | 3u48_A | 9.80909e-45 | 120 | 588 | 91 | 563 | A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 |
PDB | 3u4a_B | 5.04467e-44 | 120 | 588 | 91 | 563 | A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 |
PDB | 3u4a_A | 5.04467e-44 | 120 | 588 | 91 | 563 | A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 |
PDB | 4i3g_B | 3e-34 | 61 | 462 | 53 | 427 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |