y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00034262m |
Family | GT19 |
Protein Properties | Length: 213 Molecular Weight: 23557.7 Isoelectric Point: 9.43 |
Chromosome | Chromosome/Scaffold: 032183 Start: 3367 End: 6436 |
Description | transferases, transferring glycosyl groups |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT19 | 2 | 167 | 1.96182e-44 |
QEVVRMLPIFLHAVQNLRHTFNELSQVIPVAPHRDVKTYVEKAVQSGPFPVVLIPGGSLKERYDAFSASRAALCTSGTAVMELTLAKLPCVVAYQAHFIT ECLIHLRKKINFISLPNILLNSPVVPEVLFRACTAKNLATKLSKVISNDDVRQMQVESAGQVFQVL |
Full Sequence |
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Protein Sequence Length: 213 Download |
MQEVVRMLPI FLHAVQNLRH TFNELSQVIP VAPHRDVKTY VEKAVQSGPF PVVLIPGGSL 60 KERYDAFSAS RAALCTSGTA VMELTLAKLP CVVAYQAHFI TECLIHLRKK INFISLPNIL 120 LNSPVVPEVL FRACTAKNLA TKLSKVISND DVRQMQVESA GQVFQVLYEP IKKRGALFVE 180 ELGLSSNVLS PSMIAALTVL YTDKHQNIVY RN* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14089 | PRK14089 | 0.001 | 3 | 139 | 151 | + ipid-A-disaccharide synthase; Provisional | ||
TIGR00215 | lpxB | 2.0e-19 | 2 | 175 | 176 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
pfam02684 | LpxB | 5.0e-24 | 2 | 181 | 180 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
PRK00025 | lpxB | 3.0e-31 | 2 | 167 | 168 | + lipid-A-disaccharide synthase; Reviewed | ||
COG0763 | LpxB | 1.0e-36 | 2 | 176 | 175 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0008915 | lipid-A-disaccharide synthase activity |
GO:0009245 | lipid A biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28885.1 | 0 | 1 | 204 | 227 | 430 | unnamed protein product [Vitis vinifera] |
GenBank | EEC71491.1 | 0 | 1 | 212 | 261 | 475 | hypothetical protein OsI_03760 [Oryza sativa Indica Group] |
RefSeq | NP_001044267.1 | 0 | 1 | 212 | 261 | 475 | Os01g0752600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001140462.1 | 0 | 1 | 212 | 257 | 471 | hypothetical protein LOC100272521 [Zea mays] |
RefSeq | XP_002458499.1 | 0 | 1 | 206 | 237 | 445 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG911216 | 178 | 36 | 213 | 0 |
FL978570 | 213 | 1 | 213 | 0 |
CB664616 | 216 | 1 | 213 | 0 |
JG864023 | 143 | 1 | 143 | 0 |
FL978571 | 157 | 57 | 213 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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